Gene detail

Detailed information of amic_s0426.g2.t1 in Acropora microphthalma

Genomic Location: sc0000426_pilon:71556...76586
NR annotation: XP_015771838.1, PREDICTED: uncharacterized protein LOC107350122 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0426.g2.t1

ATGAATTTTGAAGCTATGGAGTACGAAACCAGACGGAAGGAACTGAATGCACTTACATTTGATAAGTTGAAGGAAATGTGTGTAGAGAGACACATTGACTTCGGTGGTAAGAACAAAGCAGAGTTGATTGATCTTTTGAGTGAGTTTATGGAGCTGAAAAGTGGCGATTCGGTGACGGAAGTTACGGCTCCACCGGAAGTAAACGTTCAAATTATGAAAATGCTTATGCAGATGCAGGAAGTGCAGATGAGATGGCTAGAGCAGCAGCAAAGAGAGGAAGAAAAACGAAAAAAAGAAGAAGATGAAAGAAGAAAAAGAGAAGAGGAAGATCGAATAGCTAAAGAAAAAGAACTAAAAAGGCAAGAAGAACGAGAAATGGAAAAAATGGAGAAAGAGCAGAGGTTCCTGTCAGAACTAATGAAAGAGTTAGCAGATTCTAAAAAGGAAAAGGACGCTGTGAAGTTACCAAAACCTGTACTTCAAAAGTTTACAGAAGGAGATGACATCGAAAGCTTTCTAGATATGTTCGAGAGAGTAGCCTCCCTCCACAAATGGCCGAAGACTATTTGGGCAACACAGTTAGCTGGTGTATTATCTGGAAAGGCCCTGAAAGCTTTTTCATCCCTTCCCACTGAAAAATCTACGAAATATGAAGAAGTAAAACATGCCATTTTGCAACGATACAACGTCAACTCTGAAACGTATCGTCTGAGATTTCGAAATGATTTTTATAAACAAGGCGAATCACATCATGAATACTTCAATCGTTTAGAGGAACACTTCCAGCGCTGGACAAAGTCGCAAGGGATGGAACTCAGAGACCTGATAATTTTGGAACAATTTCTTCAAGGAGTGCCGACTGACCTATCAGTTTGGCTTAAAGAAAGAAAGCCTACATCAGCTAAAGAAGCCGCACAAATGGCAGATGACTACATCCTAGCCCGTGGAACTAAGCCTTCTTATGAGAAGTTACACAGACCTCAAAGACTACAAAGTGAACCCTCCACAAAAGTGATGCAGGAAAAGCAGCAATCATCTAAGCCTTTTTTCAGAGTTCCTCCCCCAGAAGTACGCAATATACCGCCTCGAAGCAAAACGAATACTCAAGGTGAGAAACAGTGTTACAATTGTAAGAAATGGGGACACATTGCAACAGTTTGCCCTCAAAGAACATCCACGCCAAGTTTTAAAGCAGATGCTAAGCCTGCTTTTGTAAGTGAATCTCGTCCACAGCGACTATGCAACCCAAGTAACAGCAAGTACATACGTGAAGGTAGGGTTGAGGGAAAAGACGTAAAGATGCTTGTCGATACTGGTAGCCATACAACTATTGTGAAAGCTGATCTTGTGGAAAACGAAAAGTGGAATGAAGGGGAAACTATCAACGTTATTTGTGTTCATGGAGATTCAGTGGACTATCCAACAGCGGAAGTGGATTTAGAGATGGATGGTTGGGCGAAGAAGACCAAAGTAGCTCTGGTACCAGAGGTACCAGTTGACGTTCTGATTGGGATAAAGGACTTTGATTTGTCAGAAGAAATGTCAACTCAACCAGACTGCGCGCATAATCTTGCCGTAATGACAAGATCACAGACAAGAAAGGAGGCTGAGGAGCAAAGCAAAGTGGAAGGTGCTGACAATGTAAGACTTGCTGACAAAAAGGAAACTGTGAATGATGTTACAGGACAAACCTGGAAACTGGGAAACATACAAAAAGAGACCATAAAACCTGAGGAAGAAAAACCCAAAACCGAAAACGCTGCATCAGATAGTATAAATCCTGAGAATGTAGGTCCTGAGATGATCCAGAGGTGGCAGTCAGAAGACCCAACCTTAGAGAAAGCGAGAGCCTTAGCAAGAGAGCCTAAACAGCAGGAGGAAACAAAATCAGAAACAACTTTCTATTACAGACAGGGCTTGTTATATCGCCAGTGGGTACCAAAGGGCAGCGACAGTGAAGATATTAGATCTGTGGAACAGTTGGTACTTCCCTTACAGTGTCGCAGCACAGTTCTCAAACTTGCACATGATGTACCTGCAGCTGGTCATCTTGGAATCAACAAAACCAAAGACCGAGTATTGCAGCGCTATTACTGGCCTGGTGTGTTTCAGGATGTTGCCAATCACTGCCGTACCTGTGAGGTTTGTCAGAAGGCGCAAGGAAAGAGATATGGAGCACGAGCTGAGATGATCCCTCTGCCATTGATTGAGAAACCCTTCCAAAGAATAGCTATGGATATTGTTGGACCACTCCCGCGGAGCAACAATGGCAACAGGTACATTCTTACCATTTGTGATTACGCAACACGTTACCCAGAGGCTATACCCATACCTAACACGGAAGCTATAACAATCGCCAAAGAGCTAGTATCAGTGTTTGCAAGGGTTGGAATCCCTGACGAGATCCTCACAGACCAAGGGTCGAACTTTATGTCGAGTCTGTTACAAGAAATGTACCTTATGTTGAATATTACTCGTTTGAGGACTTCCCCGTATCACCCACAGACCGATGGTCTAACGGAACGATTTAACGGAACACTTAAGTCGATGATCAGAAAATTTGCAGCAAGTAATCAGAGAGACTGGGACGAACACCTTCCTTACCTTCTCTTTGCATATAGAGAAGTCCCTCAAGAGTCGACTGGGTTCTCTCCTTTTGAGCTCCTCTATGGCAGGAGAGTACGTGGACCCCTTGACGTCCTAAAGGAGGCCTGGGTTGGTTACGAAGTCGAGAAAGAGAACGTTAGCGTTCATGTTTTGGAGATGAGAAGATGTCTAGAAGAAATGTCAGAGCTAGTCAAGGAAAATGCAACTAAAGCACAAAAGAAGCAGAAAAATTATTACGACAAGAAGTCCAGACCACAAAATCTCAAAGTGGGAGATGAAGTGCTAATACTTGAACCCGCAAGAAGAAGTAAATTGCAACTTGAGTGGAACGGCCCGTATAAAGTGACGAGAAGGGTATCTGAAGTTGATTACGAGGTGCAGACTCCAGGAAGGCGCAGAGAGAAGAAGGTGTATCACGTTAACTTGTTGAAGAAATGGCAGAAGCCTCAGACAGTGGAGGTGCTTACTGCTCTGGATCACGGTCAACAAGAAGAAATTTGTGAAGAGGAAAATTTTGAGGAGTTCTTACTCCACACCGAGGAGTCACCTGATGATGAAGTTGCGATAAAAGTTGATATCAACCCTGCACTTAACACTCAGCAAAGGTCTGCGCTGGGAGGCTTGCTTCACGAATTCAGAGATCTTTTCGGGAACAAATTGGGTAGAACGCAAGCTTTCGAGCACTCAATTGAAATTGGAGATGCCACCCCGATCCGTCAAGCACCTTACCGCATTCCATTGTCCCAAAGGCAGCTGGTGAAAGATGAGCTTGACAAGATGCTTAAAATGGGTGTGATTAGGCCTTCCACAAGCCCCTGGGCATCACCAGTCGTAATCGTACCTAAGAAAGATGAAACTGATCATAAACCGCTGATCTGGCTTCAAAAAATGAAGGATACAAACCAAAGGTTGACGCGATGGGCAATTACTGTCCAGCAGTATCAATATGAAATAAGACACCGACCTGGAGTTCAACATGGCAATGCTGATGGCTTATCGCGGGGACCGCTGTGA

Transcript

amic_s0426.g2.t1

TCTTCTTTGAAGCTATGTTAGACAAATAAAGTGTTTTAAGTGAAAACAAGGAATCTACTCCTGGCTTCGTGACATATTTGGTGGCAGCGTCGGGATCACCTTGCCGAGGTTTTACGTCAGTAAGCAAGGACCCACAGTGGATTAGAAACAATGAATTTTGAAGCTATGGAGTACGAAACCAGACGGAAGGAACTGAATGCACTTACATTTGATAAGTTGAAGGAAATGTGTGTAGAGAGACACATTGACTTCGGTGGTAAGAACAAAGCAGAGTTGATTGATCTTTTGAGTGAGTTTATGGAGCTGAAAAGTGGCGATTCGGTGACGGAAGTTACGGCTCCACCGGAAGTAAACGTTCAAATTATGAAAATGCTTATGCAGATGCAGGAAGTGCAGATGAGATGGCTAGAGCAGCAGCAAAGAGAGGAAGAAAAACGAAAAAAAGAAGAAGATGAAAGAAGAAAAAGAGAAGAGGAAGATCGAATAGCTAAAGAAAAAGAACTAAAAAGGCAAGAAGAACGAGAAATGGAAAAAATGGAGAAAGAGCAGAGGTTCCTGTCAGAACTAATGAAAGAGTTAGCAGATTCTAAAAAGGAAAAGGACGCTGTGAAGTTACCAAAACCTGTACTTCAAAAGTTTACAGAAGGAGATGACATCGAAAGCTTTCTAGATATGTTCGAGAGAGTAGCCTCCCTCCACAAATGGCCGAAGACTATTTGGGCAACACAGTTAGCTGGTGTATTATCTGGAAAGGCCCTGAAAGCTTTTTCATCCCTTCCCACTGAAAAATCTACGAAATATGAAGAAGTAAAACATGCCATTTTGCAACGATACAACGTCAACTCTGAAACGTATCGTCTGAGATTTCGAAATGATTTTTATAAACAAGGCGAATCACATCATGAATACTTCAATCGTTTAGAGGAACACTTCCAGCGCTGGACAAAGTCGCAAGGGATGGAACTCAGAGACCTGATAATTTTGGAACAATTTCTTCAAGGAGTGCCGACTGACCTATCAGTTTGGCTTAAAGAAAGAAAGCCTACATCAGCTAAAGAAGCCGCACAAATGGCAGATGACTACATCCTAGCCCGTGGAACTAAGCCTTCTTATGAGAAGTTACACAGACCTCAAAGACTACAAAGTGAACCCTCCACAAAAGTGATGCAGGAAAAGCAGCAATCATCTAAGCCTTTTTTCAGAGTTCCTCCCCCAGAAGTACGCAATATACCGCCTCGAAGCAAAACGAATACTCAAGGTGAGAAACAGTGTTACAATTGTAAGAAATGGGGACACATTGCAACAGTTTGCCCTCAAAGAACATCCACGCCAAGTTTTAAAGCAGATGCTAAGCCTGCTTTTGTAAGTGAATCTCGTCCACAGCGACTATGCAACCCAAGTAACAGCAAGTACATACGTGAAGGTAGGGTTGAGGGAAAAGACGTAAAGATGCTTGTCGATACTGGTAGCCATACAACTATTGTGAAAGCTGATCTTGTGGAAAACGAAAAGTGGAATGAAGGGGAAACTATCAACGTTATTTGTGTTCATGGAGATTCAGTGGACTATCCAACAGCGGAAGTGGATTTAGAGATGGATGGTTGGGCGAAGAAGACCAAAGTAGCTCTGGTACCAGAGGTACCAGTTGACGTTCTGATTGGGATAAAGGACTTTGATTTGTCAGAAGAAATGTCAACTCAACCAGACTGCGCGCATAATCTTGCCGTAATGACAAGATCACAGACAAGAAAGGAGGCTGAGGAGCAAAGCAAAGTGGAAGGTGCTGACAATGTAAGACTTGCTGACAAAAAGGAAACTGTGAATGATGTTACAGGACAAACCTGGAAACTGGGAAACATACAAAAAGAGACCATAAAACCTGAGGAAGAAAAACCCAAAACCGAAAACGCTGCATCAGATAGTATAAATCCTGAGAATGTAGGTCCTGAGATGATCCAGAGGTGGCAGTCAGAAGACCCAACCTTAGAGAAAGCGAGAGCCTTAGCAAGAGAGCCTAAACAGCAGGAGGAAACAAAATCAGAAACAACTTTCTATTACAGACAGGGCTTGTTATATCGCCAGTGGGTACCAAAGGGCAGCGACAGTGAAGATATTAGATCTGTGGAACAGTTGGTACTTCCCTTACAGTGTCGCAGCACAGTTCTCAAACTTGCACATGATGTACCTGCAGCTGGTCATCTTGGAATCAACAAAACCAAAGACCGAGTATTGCAGCGCTATTACTGGCCTGGTGTGTTTCAGGATGTTGCCAATCACTGCCGTACCTGTGAGGTTTGTCAGAAGGCGCAAGGAAAGAGATATGGAGCACGAGCTGAGATGATCCCTCTGCCATTGATTGAGAAACCCTTCCAAAGAATAGCTATGGATATTGTTGGACCACTCCCGCGGAGCAACAATGGCAACAGGTACATTCTTACCATTTGTGATTACGCAACACGTTACCCAGAGGCTATACCCATACCTAACACGGAAGCTATAACAATCGCCAAAGAGCTAGTATCAGTGTTTGCAAGGGTTGGAATCCCTGACGAGATCCTCACAGACCAAGGGTCGAACTTTATGTCGAGTCTGTTACAAGAAATGTACCTTATGTTGAATATTACTCGTTTGAGGACTTCCCCGTATCACCCACAGACCGATGGTCTAACGGAACGATTTAACGGAACACTTAAGTCGATGATCAGAAAATTTGCAGCAAGTAATCAGAGAGACTGGGACGAACACCTTCCTTACCTTCTCTTTGCATATAGAGAAGTCCCTCAAGAGTCGACTGGGTTCTCTCCTTTTGAGCTCCTCTATGGCAGGAGAGTACGTGGACCCCTTGACGTCCTAAAGGAGGCCTGGGTTGGTTACGAAGTCGAGAAAGAGAACGTTAGCGTTCATGTTTTGGAGATGAGAAGATGTCTAGAAGAAATGTCAGAGCTAGTCAAGGAAAATGCAACTAAAGCACAAAAGAAGCAGAAAAATTATTACGACAAGAAGTCCAGACCACAAAATCTCAAAGTGGGAGATGAAGTGCTAATACTTGAACCCGCAAGAAGAAGTAAATTGCAACTTGAGTGGAACGGCCCGTATAAAGTGACGAGAAGGGTATCTGAAGTTGATTACGAGGTGCAGACTCCAGGAAGGCGCAGAGAGAAGAAGGTGTATCACGTTAACTTGTTGAAGAAATGGCAGAAGCCTCAGACAGTGGAGGTGCTTACTGCTCTGGATCACGGTCAACAAGAAGAAATTTGTGAAGAGGAAAATTTTGAGGAGTTCTTACTCCACACCGAGGAGTCACCTGATGATGAAGTTGCGATAAAAGTTGATATCAACCCTGCACTTAACACTCAGCAAAGGTCTGCGCTGGGAGGCTTGCTTCACGAATTCAGAGATCTTTTCGGGAACAAATTGGGTAGAACGCAAGCTTTCGAGCACTCAATTGAAATTGGAGATGCCACCCCGATCCGTCAAGCACCTTACCGCATTCCATTGTCCCAAAGGCAGCTGGTGAAAGATGAGCTTGACAAGATGCTTAAAATGGGTGTGATTAGGCCTTCCACAAGCCCCTGGGCATCACCAGTCGTAATCGTACCTAAGAAAGATGAAACTGATCATAAACCGCTGATCTGGCTTCAAAAAATGAAGGATACAAACCAAAGGTTGACGCGATGGGCAATTACTGTCCAGCAGTATCAATATGAAATAAGACACCGACCTGGAGTTCAACATGGCAATGCTGATGGCTTATCGCGGGGACCGCTGTGAGCAACTTAACGGGGAAGGAATGTAACGAAGTTTCGAGAAATCAACAGAACAATTTAGAACATTGAACTGCCATATCACTATCTCATGAGCTGCGCTAGAAACTTCTCCTTATTCCAGTACATTCTGTTGAGTTATTTTAAGGATGTCTCATCATGAGGGTCAAGAATGTTGTTACTACTAAAAATAGTGTTTTAGAAATAGGTATGATGTAATCGGCTGTTATATATATACTTCGACATAGTACGACCTAGAAAAAGAATCTTCTTTGAAGCTATGTTAGACAAATAAAGTGTTTTAAGTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
A1YEQ3	Zinc finger protein 449 OS=Gorilla gorilla gorilla OX=9595 GN=ZNF449 PE=3 SV=1
Q6P9G9	Zinc finger protein 449 OS=Homo sapiens OX=9606 GN=ZNF449 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02023 all species →	SCAN	SCAN domain	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR003309 all species →	Domain	SCAN domain	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR038269 all species →	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888 all species →	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0426.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.