Gene detail

Detailed information of amic_s0434.g2.t1 in Acropora microphthalma

Genomic Location: sc0000434_pilon:66546...85645
NR annotation: XP_044179239.1, D-inositol 3-phosphate glycosyltransferase-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0434.g2.t1

ATGTCACAAGATGAAGTATGTCAACAAGCAAGTGCAGTGCAGATGTCCCAGGGGCAAATattaaacattactctgctagcaagtgaatggaagtcgtcagctggtggtttgtcaacattaaatagggagcttgcaattaatctgtcacagatgcaaaatgtgagagtttcactgttagtcccggagggtgcttgtgatgatgaagacaaaagggaggctagaggttttggcatcagtattcttgatgcaaagaaatgtgttggtgttgatcctcttctttggttgagcaacccacctcaagatcacaaaatagatgttattgttggtcatggtgtgaaacttggttgtcaggtacaactcattaaaagacaggcacaattccaaaattgcaagtgggtacatgtggtccatactgaaccagaagacctcggcaaatttaaggtctatgataatccaactttaaaaggtcaagagaagcactggaatgaggttgaactttgtgaaagtgctgaccttgttgttccagtgggaccaaagcttgcaaaagcttatcataggtatttgaagtcaagtaaaaacagtggggacttttttgagctcattcctggtctttttgagcgtgagtttggagatttggttgcaaggctgaaccccaaagatgagagggatgattttattgtgttgttgtgtgggcgtggtgataaggaggattttgaagttaaagggtacgacattgctgtcaaagcctttgctgatcagcgactgaagggaaaacgttactctttgcttttcgttggctcacctaaagaagagcaggatgaggtcagggaaaggctgctcacttgtggaattgataagaaacagctgacagtgagagagtttgtaaagagcagagaaaaaatgaaggatctcttctgtgaggtggacatggtcatcatgccttcaaaatcagagggatttggccttgttgcccttgaagccctgtcagctggcttacccattcttgttgggagcaactcaggatttgcaagagcaatagaggacattccattgggattatacagcatagttgattcagaatatccTTCTTATTGGGCTGAACGTATTGAGGGTGTTTGTGATAGACATAGAGTGGCCCTTCAAGAAAACGAAATGCTGAAAGAACATTATGGGAAGAACTACTGTTGGAAAACACAGCGTGAAGAACTTGTTGACAGATTATGGAAGATGGTTTATGACTTTTTGATCAAATTAAAAATTGAGGCAGCACGTCTAAATGAAGAAGAAACGAAAGATGTCCATGACATGTTAACACCCCAAGTCAAAACCTTCATGAAGACGCATAAATGTTCCAATGTTAAAGTACAAGGAGTGAGAGCATTAATTGAATTTTTAAAAATGGCGTACGATGCATCTCAAgttgctctcaataagggctctcttatcatcagtctggattgcaaaacgttaaaaggtcttgaccagctatggaaggactatctctctggtcacctgaataaagtggctgagcggtatctggtgaccgacgaaatgaagaagaagctcaacctgaggaaaatcaacttgaagacaaccattgatgagaaaaactatttgaactgcaggaaagtattcatggaatcttcagacgtaaatgctaaagcattcgtagacagaagttcttgcttctacggtagcaccgcacttcattctgcaatccatggcaacaatgcagctgttgttaacgtgttacttgcaaacaaggtggatgcgagtattggtgaccaaaaaggaaacacagctcttcattcatccgcttccaagcaactttctgtcatttcacagttgttaattgacgctggctgcaaaatcaatggaaggaacgacaagggtgaagcactacttcattttgctattcgtggcaacaatatagctcatgttcagcttttgctaaagattaacggggctgcaaattttcaggacgtatggagaaatacccctcttcatatatctgcgggtgagggattttctgacatctcacagttgttgattgacgctggcggcaaaaccaatgtgattaacagcgagggtgaaacgccactttattctgctgttcgtggcaacaaaaaagctgatgttcagcttttgctagagaacaaagccgatgcgaatattcaggaccgacgcggaaatagccctcttcatatatctacggttaggggattttctgacatttcacaggtgttgattgacgctggctgcaaaatcaatgaaagtaacgaaaggggtgaaacgccactttattctgctgttcgtggcaacaaaaaagctgttgttcagcttttgctagagaacaacgccgatgcgaatattcaggaccgacgcggaaatagccctcttcatatgtctacggttaggagattttctgacatttcacagttgttgattgacgctggctgcaaaatcaatgaaagtaacgaCaggggtgaaacgccactttattctgctattCgtggcaacaaaaaagctgatgttCagcttttgctaaagaacaacgccgatgcgaatattcaggaccgacgcggaaatagccctcttcatatatctacggtTaggggattttctgacatttcacagttgttgattgacgctggctgcaaaatcaatgtgaGtaacgacgagggtgaaacgccacttttttctgctattcgtcgcaacgatattgctcatgttgaGcttttgctaaagaacaacgccgatgctaattttcaggacaCatcgggaaatacccctcttcatatatctacgggtaagggattttctgccatttcacggttgttgatagactctggatgcaaagtcaatgagagtaaccacgagggtgaaacgccacttctttctgctgttcgtagcaacaataaagctcatgttcagcttttgctaaagaataacgctgatgcgaattttcagggcagactgggaaatacccctcttcatatatctacggaatccggcggcgacatcaacctgagcaacgaccgcgatatgagtacattactcttcgatgcagtccatagaaataatgcagctattgttaagcttttgctcgaacacaggacgaattcgagtatgcaagattcatggggacatacgccgcttcatagagccatcattaaaggattttccgatatttcggaaatgctgataaaatctggctgcaatgtcaacctgagagacaacacaggtactacaccacttcactgttctgtccttgtaaggagtgaagccatcgttagccttttaattgcaagcgacgcagatgcgaatattcaagacttgtcgggaaacacgccgcttcatttatcaattagcaagggattttccgaaattgcacagttgttgataggagctgcgtgcaacacaaatctaagaaaccaaagaggtgagacaccactccattctgctgtccgtgaaaacaatacaactgtggtgaagcatttgctcaaaagcgaggctgacgcaaacattcaagaccaacggggaaatacaccgcttcatatttcgagtttgaagggattttccgacatttcacagttattgattgaatacggctgcgacatcaatctaagaaacAACCACGGTGAGAGCCCTTTTGATGTTGGATCTCTTCCTTCTCATGATACAAGAAGTTAA

Transcript

amic_s0434.g2.t1

gaagtaagaaattggaactgaatttaagatctgtgataattttgcagtacgattaatttgcatttgaactgtacgttagagaacattatattttagcgtttgtttcgtgcatcaccgaccctggaagcgtcttttctttcaggcagaaatttgaatgctttttcattgacaacaggtggaaaagaagcagagacccttcaatctacccacagatagtgttgatcaactttgatCCTGTCTGAGGTTTGTTCTCATTAGCTTTGAAATCATGTCACAAGATGAAGTATGTCAACAAGCAAGTGCAGTGCAGATGTCCCAGGGGCAAATattaaacattactctgctagcaagtgaatggaagtcgtcagctggtggtttgtcaacattaaatagggagcttgcaattaatctgtcacagatgcaaaatgtgagagtttcactgttagtcccggagggtgcttgtgatgatgaagacaaaagggaggctagaggttttggcatcagtattcttgatgcaaagaaatgtgttggtgttgatcctcttctttggttgagcaacccacctcaagatcacaaaatagatgttattgttggtcatggtgtgaaacttggttgtcaggtacaactcattaaaagacaggcacaattccaaaattgcaagtgggtacatgtggtccatactgaaccagaagacctcggcaaatttaaggtctatgataatccaactttaaaaggtcaagagaagcactggaatgaggttgaactttgtgaaagtgctgaccttgttgttccagtgggaccaaagcttgcaaaagcttatcataggtatttgaagtcaagtaaaaacagtggggacttttttgagctcattcctggtctttttgagcgtgagtttggagatttggttgcaaggctgaaccccaaagatgagagggatgattttattgtgttgttgtgtgggcgtggtgataaggaggattttgaagttaaagggtacgacattgctgtcaaagcctttgctgatcagcgactgaagggaaaacgttactctttgcttttcgttggctcacctaaagaagagcaggatgaggtcagggaaaggctgctcacttgtggaattgataagaaacagctgacagtgagagagtttgtaaagagcagagaaaaaatgaaggatctcttctgtgaggtggacatggtcatcatgccttcaaaatcagagggatttggccttgttgcccttgaagccctgtcagctggcttacccattcttgttgggagcaactcaggatttgcaagagcaatagaggacattccattgggattatacagcatagttgattcagaatatccTTCTTATTGGGCTGAACGTATTGAGGGTGTTTGTGATAGACATAGAGTGGCCCTTCAAGAAAACGAAATGCTGAAAGAACATTATGGGAAGAACTACTGTTGGAAAACACAGCGTGAAGAACTTGTTGACAGATTATGGAAGATGGTTTATGACTTTTTGATCAAATTAAAAATTGAGGCAGCACGTCTAAATGAAGAAGAAACGAAAGATGTCCATGACATGTTAACACCCCAAGTCAAAACCTTCATGAAGACGCATAAATGTTCCAATGTTAAAGTACAAGGAGTGAGAGCATTAATTGAATTTTTAAAAATGGCGTACGATGCATCTCAAgttgctctcaataagggctctcttatcatcagtctggattgcaaaacgttaaaaggtcttgaccagctatggaaggactatctctctggtcacctgaataaagtggctgagcggtatctggtgaccgacgaaatgaagaagaagctcaacctgaggaaaatcaacttgaagacaaccattgatgagaaaaactatttgaactgcaggaaagtattcatggaatcttcagacgtaaatgctaaagcattcgtagacagaagttcttgcttctacggtagcaccgcacttcattctgcaatccatggcaacaatgcagctgttgttaacgtgttacttgcaaacaaggtggatgcgagtattggtgaccaaaaaggaaacacagctcttcattcatccgcttccaagcaactttctgtcatttcacagttgttaattgacgctggctgcaaaatcaatggaaggaacgacaagggtgaagcactacttcattttgctattcgtggcaacaatatagctcatgttcagcttttgctaaagattaacggggctgcaaattttcaggacgtatggagaaatacccctcttcatatatctgcgggtgagggattttctgacatctcacagttgttgattgacgctggcggcaaaaccaatgtgattaacagcgagggtgaaacgccactttattctgctgttcgtggcaacaaaaaagctgatgttcagcttttgctagagaacaaagccgatgcgaatattcaggaccgacgcggaaatagccctcttcatatatctacggttaggggattttctgacatttcacaggtgttgattgacgctggctgcaaaatcaatgaaagtaacgaaaggggtgaaacgccactttattctgctgttcgtggcaacaaaaaagctgttgttcagcttttgctagagaacaacgccgatgcgaatattcaggaccgacgcggaaatagccctcttcatatgtctacggttaggagattttctgacatttcacagttgttgattgacgctggctgcaaaatcaatgaaagtaacgaCaggggtgaaacgccactttattctgctattCgtggcaacaaaaaagctgatgttCagcttttgctaaagaacaacgccgatgcgaatattcaggaccgacgcggaaatagccctcttcatatatctacggtTaggggattttctgacatttcacagttgttgattgacgctggctgcaaaatcaatgtgaGtaacgacgagggtgaaacgccacttttttctgctattcgtcgcaacgatattgctcatgttgaGcttttgctaaagaacaacgccgatgctaattttcaggacaCatcgggaaatacccctcttcatatatctacgggtaagggattttctgccatttcacggttgttgatagactctggatgcaaagtcaatgagagtaaccacgagggtgaaacgccacttctttctgctgttcgtagcaacaataaagctcatgttcagcttttgctaaagaataacgctgatgcgaattttcagggcagactgggaaatacccctcttcatatatctacggaatccggcggcgacatcaacctgagcaacgaccgcgatatgagtacattactcttcgatgcagtccatagaaataatgcagctattgttaagcttttgctcgaacacaggacgaattcgagtatgcaagattcatggggacatacgccgcttcatagagccatcattaaaggattttccgatatttcggaaatgctgataaaatctggctgcaatgtcaacctgagagacaacacaggtactacaccacttcactgttctgtccttgtaaggagtgaagccatcgttagccttttaattgcaagcgacgcagatgcgaatattcaagacttgtcgggaaacacgccgcttcatttatcaattagcaagggattttccgaaattgcacagttgttgataggagctgcgtgcaacacaaatctaagaaaccaaagaggtgagacaccactccattctgctgtccgtgaaaacaatacaactgtggtgaagcatttgctcaaaagcgaggctgacgcaaacattcaagaccaacggggaaatacaccgcttcatatttcgagtttgaagggattttccgacatttcacagttattgattgaatacggctgcgacatcaatctaagaaacAACCACGGTGAGAGCCCTTTTGATGTTGGATCTCTTCCTTCTCATGATACAAGAAGTTAAGGTATATATGATTCAGAGGTGACATCCAGTGGATCTTTCTCAACGAAGCCTTCACGTTTCGCTGGTAAAGGAAAAGAGCAATCTCGCCCAAAAACCAAACCAGTCAAGTTACACAGCAGCGGGAGACAAGTGGCACAAATCCCAATGGATGTGAACAGAGCTGTTCCAATAGAATCAAAGCGAAACG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D5UJ42	D-inositol 3-phosphate glycosyltransferase OS=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134) OX=446466 GN=mshA PE=3 SV=1
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1
A0QQZ8	D-inositol 3-phosphate glycosyltransferase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=mshA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051631 all species →	Family	Ankyrin repeat and KH/SAM domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23206 all species →	MASK PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0434.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.