Gene detail

Detailed information of amic_s0437.g6.t1 in Acropora microphthalma

Genomic Location: sc0000437_pilon:65253...95635
NR annotation: XP_015754757.1, PREDICTED: kelch-like protein 12 isoform X1 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0437.g6.t1

ATGTTGGCTGATCAGCACAGTTTAAAGGACTTAAAAGAGACTACGGAAAGGAAAATGGCGTCAATGTACAAGGACATTTGTGAGAAGGAAGAGTTTCTGTCTGACATGAATGTCGATGTATTATCAGCTCTTCTCTGTCGAGATGACCTCATCGCTCCATCGGAGAACTTCGTCTTCAAATCAGTGATGCAGTGGATCAAGTACAGGAAGGAAGAAAGGATGGATATGGCAGCTAAAGTTATCGGAGCTGTTCGCTTGGGACTGGTGGACAGCAAGGATGTGATCGAGGAACTCGATACTGAGGAAATGAAGGCGATTCCAGAAATAAACATGCTGTTGCAGGAAGCATTAATACGCAATTTCAGGCCTTCGAGGAGTTCCGCGTTGGCACTGGAGAAAGGGAAACCAAGATCAATTAAGTCGGTACTTGTTGCCATTCTTCCCAATAGTAAGATCTGTTATTTTGATGTCCAGTCCAAGACATGGAAGAAGTTGTCCTCAGTGCAAAAACTAGTTCAGGCATTTGAAACGCATAGGGCAAAGGTAGTTGAATGTCATTGCGCGGAACTTATAGTGTTGGCCGTGCCTCATTTCCTCGGTTTCAGTAGTTTTTCTCTTTTAAACTACTGCTGCCTGTGCTTTGAGACTGAAGGAGAGCAAATGCTATCTGAAGCATACTTCATGAAGAAATTTGAGCACCCTAACGTGATTAAGTTGTATCAATACCTCTCAGTGAACGATTTCTGTATCTACATCATGGAAAGACCTGCAAGTTGCCAGGATTTGCAACGAGTTCTACGAAAGAGACGCCTAACAGAAAAGGAAGCTCGGCGATATTTTAAACAGATCATAGAAGCCACCATCTGCTGTGAGGAGAATGGAGTCGTTCATCGCGACCTCAAGCCTGAGAACATCTTACTTGATAAGGAAAGTGACGAAATCAAAATCATTGACTTTGGCTTAGCTTCGAGAATACAATATGAACCCTACAACAAGTTCAGAGGTACAAGAGCGTACATACCACCGGAGTTCCTTAGGTCTGGTTGGTATGATAGCTGCCAGAGCACGGTCTGGACACTAGGAATGATTCTTGTAGACTTGATCTCCTCTTCCATGGCGTTTAATAACCCTGAAGAAGCGTTATTATGGCCACCTAGACTTCCTGTCTATCTCACACAAGGTAACGATGGCAAAGTACTTGTTGCCATTCCTCCCAAAAGTGATATCTGTTATTTTGATGTCCAGTCCAAGACATGGAAGCAATTGTCATCGATGCAAAACCTAGCGAAGGCATTAGAATGTTATTGCGCAGAACTTATTGGTAATTATTTGTATGTTGGAGCCAAAACCAATGATAACCATGTTATTTGTTGTTATGACATAGTTCGTGACATTTGGAGCACACTGCCATCAATTCCAGAATCGTCACATATTCAAATTGGTTCCTTGTGCCACATTGAAGACCATCTCTATGTCATTTATAAGTCTTCTGCTCCTTACAGATATAGCATGGCTACAAATCAATGGCAATCTGTTGCTATAAACTCAAAAGATATTTGCAAACTGGGCCAAAAAACATTTTGTAACAAAGCAGCTGCAGTGTACAAATCATGCTTATATGTATTTTATGGTCAAGGAAATATTAAGGACGGGATCTGGGACAAATATTCTTGTGAAGTATTTTTATCTGTTCTGTATTGTTTTGATCCAAAGAACAATGTTTGGGAACAAAAAGCACCAACCAGGACACCGCACTTTGGGTCCAGTCTTTTGGTAGTAAACAATAACCTCTATGTTGCCGGGGGGAGTTGCTTACTCCATGCATCAAGATCTGAACCACATGGCAGTCCAGCAAGTGCTCCAGCTGCCATTGAAGTTTACAATGACCAAAAAGATGCATGGTCTGTTGTAAAACAAACACACATTCCACCAAACGATCTTGGAGCAGTAGAAATTGAAGGGAGAGTATATTTTATCATTAACTCTTTCCCAGTTGATAGCGGTGTTACACTTCCACCAGGGAAGGTCTACCCTGCTATATTGGATGAGTGGAAAAATTTAAGAAACCTTGCAGAAAATGCAGTTTTGTGCTATGTTACTATGAAAAAAGAGAATCTTACAACAGAAAATGAATAA

Transcript

amic_s0437.g6.t1

GAAAGACCCATTTGAATGATGAAAATGTTTTTGAAGTACTGACTGTGGCAATTCATCTTCAATTTGCAAGTGTTGTGAACAGTGCTGCAAATACCTCATCCAACTAAGGTTTGATGTGCAGACATACTGCCGCGTCATCATGTTGGCTGATCAGCACAGTTTAAAGGACTTAAAAGAGACTACGGAAAGGAAAATGGCGTCAATGTACAAGGACATTTGTGAGAAGGAAGAGTTTCTGTCTGACATGAATGTCGATGTATTATCAGCTCTTCTCTGTCGAGATGACCTCATCGCTCCATCGGAGAACTTCGTCTTCAAATCAGTGATGCAGTGGATCAAGTACAGGAAGGAAGAAAGGATGGATATGGCAGCTAAAGTTATCGGAGCTGTTCGCTTGGGACTGGTGGACAGCAAGGATGTGATCGAGGAACTCGATACTGAGGAAATGAAGGCGATTCCAGAAATAAACATGCTGTTGCAGGAAGCATTAATACGCAATTTCAGGCCTTCGAGGAGTTCCGCGTTGGCACTGGAGAAAGGGAAACCAAGATCAATTAAGTCGGTACTTGTTGCCATTCTTCCCAATAGTAAGATCTGTTATTTTGATGTCCAGTCCAAGACATGGAAGAAGTTGTCCTCAGTGCAAAAACTAGTTCAGGCATTTGAAACGCATAGGGCAAAGGTAGTTGAATGTCATTGCGCGGAACTTATAGTGTTGGCCGTGCCTCATTTCCTCGGTTTCAGTAGTTTTTCTCTTTTAAACTACTGCTGCCTGTGCTTTGAGACTGAAGGAGAGCAAATGCTATCTGAAGCATACTTCATGAAGAAATTTGAGCACCCTAACGTGATTAAGTTGTATCAATACCTCTCAGTGAACGATTTCTGTATCTACATCATGGAAAGACCTGCAAGTTGCCAGGATTTGCAACGAGTTCTACGAAAGAGACGCCTAACAGAAAAGGAAGCTCGGCGATATTTTAAACAGATCATAGAAGCCACCATCTGCTGTGAGGAGAATGGAGTCGTTCATCGCGACCTCAAGCCTGAGAACATCTTACTTGATAAGGAAAGTGACGAAATCAAAATCATTGACTTTGGCTTAGCTTCGAGAATACAATATGAACCCTACAACAAGTTCAGAGGTACAAGAGCGTACATACCACCGGAGTTCCTTAGGTCTGGTTGGTATGATAGCTGCCAGAGCACGGTCTGGACACTAGGAATGATTCTTGTAGACTTGATCTCCTCTTCCATGGCGTTTAATAACCCTGAAGAAGCGTTATTATGGCCACCTAGACTTCCTGTCTATCTCACACAAGGTAACGATGGCAAAGTACTTGTTGCCATTCCTCCCAAAAGTGATATCTGTTATTTTGATGTCCAGTCCAAGACATGGAAGCAATTGTCATCGATGCAAAACCTAGCGAAGGCATTAGAATGTTATTGCGCAGAACTTATTGGTAATTATTTGTATGTTGGAGCCAAAACCAATGATAACCATGTTATTTGTTGTTATGACATAGTTCGTGACATTTGGAGCACACTGCCATCAATTCCAGAATCGTCACATATTCAAATTGGTTCCTTGTGCCACATTGAAGACCATCTCTATGTCATTTATAAGTCTTCTGCTCCTTACAGATATAGCATGGCTACAAATCAATGGCAATCTGTTGCTATAAACTCAAAAGATATTTGCAAACTGGGCCAAAAAACATTTTGTAACAAAGCAGCTGCAGTGTACAAATCATGCTTATATGTATTTTATGGTCAAGGAAATATTAAGGACGGGATCTGGGACAAATATTCTTGTGAAGTATTTTTATCTGTTCTGTATTGTTTTGATCCAAAGAACAATGTTTGGGAACAAAAAGCACCAACCAGGACACCGCACTTTGGGTCCAGTCTTTTGGTAGTAAACAATAACCTCTATGTTGCCGGGGGGAGTTGCTTACTCCATGCATCAAGATCTGAACCACATGGCAGTCCAGCAAGTGCTCCAGCTGCCATTGAAGTTTACAATGACCAAAAAGATGCATGGTCTGTTGTAAAACAAACACACATTCCACCAAACGATCTTGGAGCAGTAGAAATTGAAGGGAGAGTATATTTTATCATTAACTCTTTCCCAGTTGATAGCGGTGTTACACTTCCACCAGGGAAGGTCTACCCTGCTATATTGGATGAGTGGAAAAATTTAAGAAACCTTGCAGAAAATGCAGTTTTGTGCTATGTTACTATGAAAAAAGAGAATCTTACAACAGAAAATGAATAACAAGAGTTGAAAAGTTGAGGCATCATTTATAGTGTTCTTATGGCCTTAAATTGATAAATTTAAAAGTGACAGCAATCAAGGTGCATTGTTTTTGTAATATTTATGCATTGTTTAAAGTAAAACAATTTATAGCAGAATCTGTGAGAAATCCAGATATTCATTTTTCTGTAATTTcgcgacataagcttaactttggatcacaatttatcgatcgcttacctcgattcttcgctaaaaacttgaaggtgatgttccaattcagcttcctcatcttcactgataccactgtcgctgttttctcccCCCAAAaaagattttgagacgct

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62070	Serine/threonine-protein kinase pim-2 OS=Mus musculus OX=10090 GN=Pim2 PE=1 SV=1
Q9P1W9	Serine/threonine-protein kinase pim-2 OS=Homo sapiens OX=9606 GN=PIM2 PE=1 SV=1
Q86V86	Serine/threonine-protein kinase pim-3 OS=Homo sapiens OX=9606 GN=PIM3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000597 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR051138 all species →	Family	PIM Serine/Threonine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22984 all species →	SERINE/THREONINE-PROTEIN KINASE PIM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0046777 all species →	Biological Process	protein autophosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0437.g6.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.