Gene detail

Detailed information of amic_s0437.g7.t1 in Acropora microphthalma

Genomic Location: sc0000437_pilon:92351...118995
NR annotation: XP_044172496.1, kelch-like protein 12 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0437.g7.t1

TGTCATCTTTCTGCATAAATAAACATCTCTTTATTCTTGGTGCTTGGGGATAGTTTCATAATATTATTTTAACAGTCACTGTGGTTTATTGTAGATGATTGATGTTAATAAATGTGAAAAATGCTAATGTAACTATAGGTAAATCACAGGGCAGTTTAGATTCAAGATGGTCGCTCATTCTGAGATTCTTTTGTCGAAATGTGCTCAGTTCCGTGAGCAAGGTGAATTCATCGATGTTCGTTTAAAAGTTGGAGAGGACGAGTTTGCGGCTCATCGCATTATACTTGCTGCAAGTAGCGATTATTTCCACGCCATGTTTGCACACGGAATGAAAGAATCTAACCAGGAAGTGATCGAGCTTAAAGATGAAAACATTTCTGCTGCTGCTATGAAAATAGTGATGGATTCCATTTACAGTGGAGAGATCAATGTGAATGATGAAAATGTTTTTGAAGTATTGACTGCCGCAGATCATCTTCAAGTTGCAACTGTTGTGGAACAATGCTGCAAATACCTTATCCAGCTGAGGTTTGATGTGCAGACATACTGCCGCGTCATCATGTTTGCTGATCAGCACAGTTTAAAAGGATTAAAAGAGGCTACGGAAAGGAAAATGGCGTCAATGTACAAGGAAATTTGTGACAAGGAAGAATTCTTGTCAGACATGAATGCCGATGTATTATCAGCTCTTCTCTGTCGAGATGACCTCAGCGCCCCATCGGAGAACTTCGTCTTCCAATCAGTGATGCAGTGGATCAAGTACAGGAAGGAGGAAAGGATGGATGTGGCAGCTAAAGTTATTGGAGCTGTTCGTTTGGGACTGGTGGACGTCAGGGATGTGATCGAGGAACTCGATACTGAGGAAATGCAGGTTATCTCAGAAATAAACATGTTGTTGCAGAGAACGTTAATATACAACCAGAGGCCTTCGAGGAGTTCCGCGTTCGCATTGGAGAAAGGGAAACCGAGATCGATGAGTTCGGTACTTGTTGCCATTCTTCCCAATAGTGAGATCTGTTATTTTGATGTCCAGTCCAAGACATGGAAGAAGTTGTCATCAGTGCAAAAACTAGCTAAGGCAGGAGAATGTTATTGCGCAGAACTTATTGGCAATTATTTATATGTTGCAGCAAAAATCAATCGTGACCATGTTATTTGTTGTTATGACATAGTTCGTGACATTTGGAGCACACTCCCACCAATTCCTGGCTTGTCAGGGATTCAAATTGGCTCCTTGTGCCACATTGAAGACCATCTCTATGCCATTTACAAGTCTTCTGCACCTTACAAATATAACATTGCTGCAAATCACTGGCAATCTGTTGCCAGCAGCTGGAAAGCTATTTGTGACCTGAACCAAAAAACATTTTGTAACAAAGCAGCTGCTGTGTACAAATCATGCTTATTTGTGTTGTATGGTCAGGGAAATATTAGGCAGGTAAACAATGCGCGTGGGGCCACTTTTTATTGTGATGTATCTTTATCTGTTCTGTACTGTTTTGATCCAAAGAAAAACGTTTGGGAACAGAAAGCATCAACCAAAACTCCACACTATGGATCCAGTCTTTTGGTAGTGAACAATAACCTCTATGTTGCTGGGGGAAGATGCTCACTCCAAACATCAAGTTCTGAACGATATGGCCATCTTCCAGCTGGTAGTCCAGCTGCCATTGAAGTTTACAATGACCAAGAAAATGCATGGTCTGTTGTAAAACAAACACACATTCCACCAAACAATCTTGGAGCTGTAGAAATTGATGGGAGAGTATATTTTATCATCAACTCTTTCCCAGTTGACAGCGGTGTTATACTCCCACCAGGGGAAGCCTACCCTGCTATTTTAGATGAGTGGAAAAATTTAAGAAACATCGGGGAAAATGCAGTTTTGTGCTATGTTACTATAAAAAAAGAGAATCTTACAACAGAAAAAACAACATGAGTTGAAAAGTTGAGGCATCATTATTAGTGTTCTTATGGCCTCAAATTGATAAATTTAAAATGACAACAATCAAGGTGCATTGTTTTTTGTAACATTCATCCATTGTTTTAAGTAAAACAATTTAAAACAGAATCTGTGAGAAGTCCAGGTAAACTTGAAGTCTTTTAGTTTTGTGCTAATTAACATCAAACTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RGB8	Kelch-like protein 26 OS=Danio rerio OX=7955 GN=klhl26 PE=3 SV=1
Q9Y573	Actin-binding protein IPP OS=Homo sapiens OX=9606 GN=IPP PE=1 SV=1
P28575	Actin-binding protein IPP OS=Mus musculus OX=10090 GN=Ipp PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000612 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF07646 all species →	Kelch_2	Kelch motif	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR011498 all species →	Repeat	Kelch repeat type 2	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR017096 all species →	Family	BTB-kelch protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45632 all species →	LD33804P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10442	KLHL1_4_5; kelch-like protein 1/4/5	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.