Gene detail

Detailed information of amic_s0445.g2.t1 in Acropora microphthalma

Genomic Location: sc0000445_pilon:90805...93425
NR annotation: PAA53525.1, hypothetical protein BOX15_Mlig001877g1 [Macrostomum lignano]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0445.g2.t1

ATGACAAGTCTCGGGAAACGGTTTACGGGGCCTGCAAGGGGCCAATCAGACTCCGTACCGGCGATAAATGGGGCCCCACCTGAAGTAAACAATGACATGCACTGTGATATCGAAACAAGACGTGTTACTTTGTCTATTTCTGATGCTGTTATTTACATCTCTGGACTAGTGAATCACCAAATAGTCCCGATTATGCTTGTTACAGGTGCAACCGTGAGTATGGTGAGTGAGGAATTGTGGAGGAAGTGTGGAGGATATTCAAGCCTTTTAGATGTGGCTGCAACTCTAACAGCTGCGAATGGCAACCAAATTGAAGTTCAGGGTCAAGCAGAGGTGAGGCTTCGCATAGCAGAATATGATATCCTTTGGACAGTGATTGTTGCTCGCGGATTATCACATGACTGTCTGCTTGGTACAGACTTTTTCCACCAGTGCAAGTGCAAAATTTGCTATGATACGGGAATATTCATAGCCGGCTCGACTGAAGTTCCTATTCGTTATCAAAAAGTTAAACCAGTTGTGTGTCGGGTGGTTTTGGAGTCTGACACTGAGATCGAACCGGGGACCGAGCGAATTATTGGAGGACGGTTGGAGAGTGGATTCGAAAGAAACTCTGGGAGCCCGGGGGTAATTGAAGGAATGAGAACGATGCGAAAAAACAAGGAGATCTGTGTCGGGCATTTTCTTGTAGTTCCCAAGAATGGAGATGCTCCTGTACGTGTTGCTAACTTTACAGGCACACCAATCAAGCTGTCAATTGGTCACGTAATTGAATTCTACTACCCACTTAGTAGTTTGAATAGTGAGACCACTTCAAGTCAAGTGGGTGTGAACGTATCACAGGACTCCCAGCAAAAGTGTTTGAACCAGTCTGGGGATACCGAAAGCAGAGGAAAGGAATCAGAGGAGATGGGCGCGGAGAGAGATGGTTACAGTAAGCCGAATATTCAGTTTGACAAGTCTGACATTTCAGAAACCCAGCAAGAACGTTTCCTGTCAATGATTGATCAATTTTCAGATATCTTTGCAGTAGATAACTCTGATCTAGGAAAGACCAGTTTGAGTGAACACACAGTTGACACTGGCACGTCTCAACCAATCAAACAACCTCCCAGGCGTACACCACCCCATCAGAGGGAAATTATTGACCGACAGCTAGACGATTTGTTGAAACATGGGAGAATTGAGCCCTCACAGATTCCTTGGAGTAGCCCTGTGGTTCTCGCTCtttttgacagaattagaaaggccggactgaagttgaaacccgctaaatgtcagttcttgaagaagccagtaactttcttgggacacgttgtgtcgagccagggcattgagactgacccagagaaaactagagctgtagatgagtggccgactcctgagaatttagtggaattgcacagttttcttggccttgcaagttattacaggtggttcattgctgatttttccgttattgcCGAACATCTGTACAGACTAAGCAAGAAAGGAATAAGGTTCATGTGGGGCCCCGAGCAGAGGAGGGCGTTTGAAGAGCTGAAGCACCGCCTCACAAGTGCCCCAGTGCTCACCTACCCAGACTTCTCACCCGGTGCAGGGGCATTCGTACTGGACACAGATGCCAGCCAGCGACTTGGAATCGGTGCTGTTCTCTCTCAAGTCCAGTCCGACGGAACCGAGAGGGTAGTGGCCTATGGTAGCCGTTCTTTAAATGAGCACGAAAGGAACTACTGTGCCACGCGACTAGAAATGTTAGCCCTGGTTACATATGTGGACCATTTTCGCTTATACCTGGCCGGGTGCAAATTTTTATTGCGGACTGATCACCATTCATTGAAATGGCTGATGTCATTCCGAGAGCCAGAAGGCCAGATTAAACGATGGCTCGAACGTCTTCAAGAATACGACTTCGAGGTGGAACATCGGCCTGGCAAGTCACATTGTAACGCGGATGCAATGTCTCAAAAGCCGAAGCGTTTCCATGGTGACTGTCCATCTTGCGGCCAAACTGGGCTATTACGAACAAGGGTTTCTACCCTGGCACACGACAGCATGCACTCACAACAAGGATGA

Transcript

amic_s0445.g2.t1

TAAGCTTGCCGTCAGCGGGATCACTTTGCGCGGGACTGCCCTTCTTAGCCAGCAACAATACAATGACAAGTCTCGGGAAACGGTTTACGGGGCCTGCAAGGGGCCAATCAGACTCCGTACCGGCGATAAATGGGGCCCCACCTGAAGTAAACAATGACATGCACTGTGATATCGAAACAAGACGTGTTACTTTGTCTATTTCTGATGCTGTTATTTACATCTCTGGACTAGTGAATCACCAAATAGTCCCGATTATGCTTGTTACAGGTGCAACCGTGAGTATGGTGAGTGAGGAATTGTGGAGGAAGTGTGGAGGATATTCAAGCCTTTTAGATGTGGCTGCAACTCTAACAGCTGCGAATGGCAACCAAATTGAAGTTCAGGGTCAAGCAGAGGTGAGGCTTCGCATAGCAGAATATGATATCCTTTGGACAGTGATTGTTGCTCGCGGATTATCACATGACTGTCTGCTTGGTACAGACTTTTTCCACCAGTGCAAGTGCAAAATTTGCTATGATACGGGAATATTCATAGCCGGCTCGACTGAAGTTCCTATTCGTTATCAAAAAGTTAAACCAGTTGTGTGTCGGGTGGTTTTGGAGTCTGACACTGAGATCGAACCGGGGACCGAGCGAATTATTGGAGGACGGTTGGAGAGTGGATTCGAAAGAAACTCTGGGAGCCCGGGGGTAATTGAAGGAATGAGAACGATGCGAAAAAACAAGGAGATCTGTGTCGGGCATTTTCTTGTAGTTCCCAAGAATGGAGATGCTCCTGTACGTGTTGCTAACTTTACAGGCACACCAATCAAGCTGTCAATTGGTCACGTAATTGAATTCTACTACCCACTTAGTAGTTTGAATAGTGAGACCACTTCAAGTCAAGTGGGTGTGAACGTATCACAGGACTCCCAGCAAAAGTGTTTGAACCAGTCTGGGGATACCGAAAGCAGAGGAAAGGAATCAGAGGAGATGGGCGCGGAGAGAGATGGTTACAGTAAGCCGAATATTCAGTTTGACAAGTCTGACATTTCAGAAACCCAGCAAGAACGTTTCCTGTCAATGATTGATCAATTTTCAGATATCTTTGCAGTAGATAACTCTGATCTAGGAAAGACCAGTTTGAGTGAACACACAGTTGACACTGGCACGTCTCAACCAATCAAACAACCTCCCAGGCGTACACCACCCCATCAGAGGGAAATTATTGACCGACAGCTAGACGATTTGTTGAAACATGGGAGAATTGAGCCCTCACAGATTCCTTGGAGTAGCCCTGTGGTTCTCGCTCtttttgacagaattagaaaggccggactgaagttgaaacccgctaaatgtcagttcttgaagaagccagtaactttcttgggacacgttgtgtcgagccagggcattgagactgacccagagaaaactagagctgtagatgagtggccgactcctgagaatttagtggaattgcacagttttcttggccttgcaagttattacaggtggttcattgctgatttttccgttattgcCGAACATCTGTACAGACTAAGCAAGAAAGGAATAAGGTTCATGTGGGGCCCCGAGCAGAGGAGGGCGTTTGAAGAGCTGAAGCACCGCCTCACAAGTGCCCCAGTGCTCACCTACCCAGACTTCTCACCCGGTGCAGGGGCATTCGTACTGGACACAGATGCCAGCCAGCGACTTGGAATCGGTGCTGTTCTCTCTCAAGTCCAGTCCGACGGAACCGAGAGGGTAGTGGCCTATGGTAGCCGTTCTTTAAATGAGCACGAAAGGAACTACTGTGCCACGCGACTAGAAATGTTAGCCCTGGTTACATATGTGGACCATTTTCGCTTATACCTGGCCGGGTGCAAATTTTTATTGCGGACTGATCACCATTCATTGAAATGGCTGATGTCATTCCGAGAGCCAGAAGGCCAGATTAAACGATGGCTCGAACGTCTTCAAGAATACGACTTCGAGGTGGAACATCGGCCTGGCAAGTCACATTGTAACGCGGATGCAATGTCTCAAAAGCCGAAGCGTTTCCATGGTGACTGTCCATCTTGCGGCCAAACTGGGCTATTACGAACAAGGGTTTCTACCCTGGCACACGACAGCATGCACTCACAACAAGGATGAAATTTTGAGTCCACAGTGTTCCAGGAAACGTGTATGCTGTTGGGAATCAATAAGACAAGATCCACAGCTTACCATCCCGGAGGAAATGAACAGGTCCAGAATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0445.g2.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0445.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.