Gene detail

Detailed information of amic_s0448.g5.t1 in Acropora microphthalma

Genomic Location: sc0000448_pilon:96527...105245
NR annotation: XP_015774334.1, PREDICTED: piggyBac transposable element-derived protein 4-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

amic_s0448.g5.t1

ATGGCGGCAAGCTCGCATGGCTCACGTTGGTTCACAGCCGAGGAAGTTTTACAAGAAGTTTTTGCCGATAGAGACTCTGAATTTAGTGACGAGGAAAGTGAAGATGGTTTTGAATATACTGACAATGGCTCTGGCTCCGAAGAAAATGATGAAAGTGGCCAAGAAGCCGAAAGTTTCGAGGAAGATGACGGCCGAAGTGATAGTGGAGACAGTGAAAGTGAGGAGGAAAATGCAGCACCTAATagaggcaaaggaagaggaaggggtggtcgtggtcgaggaagaggtgttcgtggtggaggaagaggcggtcgtggtgCAGCAAGGGGTCGTCGTGGTAGAGCAAGAGGCGCTCGTGGAGCTCGACAACCACGTGGCCAACAAATTGTTCAACAAGCGGATCTTGAAGCACAGTGGCTTCCAGTGGACAGAGAGCCAAATGTTCCTCCTTTCACTGGCACTCCTGGGATAAAGGTACCACTTCCAAATAATCCCTCAACAGGGGACTTTTTGAACTTATTTCTCACCGATGAATTTTTTGACATCCTTGTTGAGCAGACAAATTTGTATGCAATTCAATACAAAAGGAACAATCCCAATTTACCACCACATAGCCGTGCCAATGAGTGGTTTGACACAACCCGAGTTGAAATGAAACAATTTATTGCCCTTTCACTATTGATGGGAATTGTGAAAAAACCAGAGATTGCACAGTACTGGAGTACAAATCCCCTCCTCAAAGGATCTATTTTCAACAGTGTTATGCCTCGAAATAGATTCCAGAGCATTCTTCAGTTTCTGCACTATGCTGACAACAGCCAGTTTGATCCCAATGATCCTGATCGTGATCGCCTATACAAAGTCAGGCCTGTTGTTGAGTACCTTGTAAACAAATTTAGAACTGTGTATATTCATGAGGATCATATTTCCATTGATGAGGAACTTCTGTTATGGAAAGGGAATCTGGCATTCAAGCAGTACATTCCCATGAAAAGAGCGCGATTTGGCATAAAGATGTTCAGCTTATGTGAAACCTCAGGATATTTATGGAACTCTTTTGTTTACCTGGGTAAAAAACCCAACCGAAATGGTGATGACCCAGACCTAGTTCGAAGGTTGGGCAAAAGTGGAGCTGTCATTCCGAGGCTGATGGGAACACCCCTGAATAAAGGGCGGGATCGGGAAGGCAACCAAGTTAGGAAGCTGCAAGTTGTGCATGATTACAACCGCTACATGGGAGGTGTTGACCGGAATGATGAAATGCTCGCCAATTACATCTCTGTTCGAAAGAGCATGAAGTGGACAAAGAAAGTTGCTTTCCACTTCATTGAAGAAGCTGTCCTCAATGCTTATCTTTTGAACAAGAAATCTGACAACAGGAAGCGCTACCTAAAATTCAAGTTGGATGCAATCTCAGCACTTCTTGCTGCAGGTGGTACAGACATTGCTGCCCCAACTGCAACTGACCGCTTGTCAGGACGCCATTTCCCAGAAGTGATACCTCGTACCCCCATGAAACAGAATCCCCAGAAGAGATCTGACATGGGCTTTAAGGACTACGGAGTCAAAGATGTACAAATTCTAGCTGAACACTTCTTCCAGGGAGAGCCTGAGGAAAAGAAAAATGAAAAGAAGGAGGAACACCTCTCTGAATGGCAAAAGTTGAAATATAACTTTTTGCAAATGAGAGAAGACATTCCACCTGAGATTACTAAGCCAACAAACAACATGTTGACGAAGTCCTCAACAGAGTGGCTTCTAAAGCGAATGCTCTCAACGCGTTCAACTTACCAGCATTTGTTTCCTGAAATGCTCTGCATTGCTGAGGTGTGCCTTTCTTTGCCAGTAAGCAACGCGTGGTCTGAAAGGGGCGCCTCAGCAATCAAGCGTATTAAGACGCGGATGAGAAGCGGAATCAAAGATGATATGCTTGAGGCACTGATGCAGATTTCAATTAACGGTCTAAAGGTAAAGGAACTGGAATGCACCGGTGTTGTGAAGGAGTCAGTCAAACAGTGTTTAAATGAGAAGCCTAGTAAGAAGCTCATGGCCAAGAAGACTGCAACTGGTAATCGTAACACCTCTACAGGTTCAACGAATGATGTTGCAGTTCAAGTGGAGATTTCTGAAACTGAAGGTGAAGAGCCTGAGAATATTGATGACAGCGACGTAGTTCAGACTGAGAAGGAAGATCAGCTTCAACTTGAGGTTAATGCTGCTattgaattgatgaaattgaattgctattga

Transcript

amic_s0448.g5.t1

CGTATATATATGTCCTCATGAAAGCTTTTGTTTCTTTTACCCGGTCGTTCGCGAGTTTTTACCGTGGTCGTTTCAAAGGACCTGAGAGGCATTAAATAATCCGCTGACCAAGAAAATTTTGCATTGGTGGCACAACATATACCCAGGAGGCCTTGTGTCTTTTTATGAAAAATCCAAGATGGCGGCAAGCTCGCATGGCTCACGTTGGTTCACAGCCGAGGAAGTTTTACAAGAAGTTTTTGCCGATAGAGACTCTGAATTTAGTGACGAGGAAAGTGAAGATGGTTTTGAATATACTGACAATGGCTCTGGCTCCGAAGAAAATGATGAAAGTGGCCAAGAAGCCGAAAGTTTCGAGGAAGATGACGGCCGAAGTGATAGTGGAGACAGTGAAAGTGAGGAGGAAAATGCAGCACCTAATagaggcaaaggaagaggaaggggtggtcgtggtcgaggaagaggtgttcgtggtggaggaagaggcggtcgtggtgCAGCAAGGGGTCGTCGTGGTAGAGCAAGAGGCGCTCGTGGAGCTCGACAACCACGTGGCCAACAAATTGTTCAACAAGCGGATCTTGAAGCACAGTGGCTTCCAGTGGACAGAGAGCCAAATGTTCCTCCTTTCACTGGCACTCCTGGGATAAAGGTACCACTTCCAAATAATCCCTCAACAGGGGACTTTTTGAACTTATTTCTCACCGATGAATTTTTTGACATCCTTGTTGAGCAGACAAATTTGTATGCAATTCAATACAAAAGGAACAATCCCAATTTACCACCACATAGCCGTGCCAATGAGTGGTTTGACACAACCCGAGTTGAAATGAAACAATTTATTGCCCTTTCACTATTGATGGGAATTGTGAAAAAACCAGAGATTGCACAGTACTGGAGTACAAATCCCCTCCTCAAAGGATCTATTTTCAACAGTGTTATGCCTCGAAATAGATTCCAGAGCATTCTTCAGTTTCTGCACTATGCTGACAACAGCCAGTTTGATCCCAATGATCCTGATCGTGATCGCCTATACAAAGTCAGGCCTGTTGTTGAGTACCTTGTAAACAAATTTAGAACTGTGTATATTCATGAGGATCATATTTCCATTGATGAGGAACTTCTGTTATGGAAAGGGAATCTGGCATTCAAGCAGTACATTCCCATGAAAAGAGCGCGATTTGGCATAAAGATGTTCAGCTTATGTGAAACCTCAGGATATTTATGGAACTCTTTTGTTTACCTGGGTAAAAAACCCAACCGAAATGGTGATGACCCAGACCTAGTTCGAAGGTTGGGCAAAAGTGGAGCTGTCATTCCGAGGCTGATGGGAACACCCCTGAATAAAGGGCGGGATCGGGAAGGCAACCAAGTTAGGAAGCTGCAAGTTGTGCATGATTACAACCGCTACATGGGAGGTGTTGACCGGAATGATGAAATGCTCGCCAATTACATCTCTGTTCGAAAGAGCATGAAGTGGACAAAGAAAGTTGCTTTCCACTTCATTGAAGAAGCTGTCCTCAATGCTTATCTTTTGAACAAGAAATCTGACAACAGGAAGCGCTACCTAAAATTCAAGTTGGATGCAATCTCAGCACTTCTTGCTGCAGGTGGTACAGACATTGCTGCCCCAACTGCAACTGACCGCTTGTCAGGACGCCATTTCCCAGAAGTGATACCTCGTACCCCCATGAAACAGAATCCCCAGAAGAGATCTGACATGGGCTTTAAGGACTACGGAGTCAAAGATGTACAAATTCTAGCTGAACACTTCTTCCAGGGAGAGCCTGAGGAAAAGAAAAATGAAAAGAAGGAGGAACACCTCTCTGAATGGCAAAAGTTGAAATATAACTTTTTGCAAATGAGAGAAGACATTCCACCTGAGATTACTAAGCCAACAAACAACATGTTGACGAAGTCCTCAACAGAGTGGCTTCTAAAGCGAATGCTCTCAACGCGTTCAACTTACCAGCATTTGTTTCCTGAAATGCTCTGCATTGCTGAGGTGTGCCTTTCTTTGCCAGTAAGCAACGCGTGGTCTGAAAGGGGCGCCTCAGCAATCAAGCGTATTAAGACGCGGATGAGAAGCGGAATCAAAGATGATATGCTTGAGGCACTGATGCAGATTTCAATTAACGGTCTAAAGGTAAAGGAACTGGAATGCACCGGTGTTGTGAAGGAGTCAGTCAAACAGTGTTTAAATGAGAAGCCTAGTAAGAAGCTCATGGCCAAGAAGACTGCAACTGGTAATCGTAACACCTCTACAGGTTCAACGAATGATGTTGCAGTTCAAGTGGAGATTTCTGAAACTGAAGGTGAAGAGCCTGAGAATATTGATGACAGCGACGTAGTTCAGACTGAGAAGGAAGATCAGCTTCAACTTGAGGTTAATGCTGCTattgaattgatgaaattgaattgctattgaattgaTGAAACTACCAGATTGTGGAGACAGTGACTCAGATAGCGCTTTTGAGTCGGACAACGATTATGACTA

Protein

Uniprot

Uniprot term	Description
Q96DM1	PiggyBac transposable element-derived protein 4 OS=Homo sapiens OX=9606 GN=PGBD4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46599	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan