Gene detail

Detailed information of amic_s0453.g4.t1 in Acropora microphthalma

Genomic Location: sc0000453_pilon:90636...97981
NR annotation: XP_029203524.2, uncharacterized protein LOC114967631 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0453.g4.t1

ATGACAACGCAAAGAAAGAGAAGGAAACAAAAGCTCACTATAAAGAACATTCCTGAGACAGAGCTGCCATTGTTCCGTGAGAGGCCATCAAGAATTGAGTATGCCGGGAAGAAGTTTGCCAAAGCCGTGTGCCCGTCGAATTTTGTCATAAACACGAAGTCAGAAGTTCTCAGCAGCTGGAGTGAAGATGAGAAAGATGTCTTTACTCAAAGATTTATTCAAATAGGAAAAGACTTTCCACTTATCGCCGTTGGCTTGCCAAATAAGACGGTCGCCCAGTGTGTTCATTTCTACTATATTACAAAACATGAGACATTTTACAAACAGCTACGGAAAATGGCAATGGAAGAGCAGCATATCACGCGGAGTTTTAAATCACGGGCTCTTCGGGGAAGAGAGACAAAAAAATCTAGCAAAGAGAGAGCTGGACTTCTTGGTAAAGAGATACCTAAGAGTAAAGCTGTGTGTTCCAGGCATAGTGACAATAATCAAAGGCTACGTACAACAAGATCGAGTGCCAGAACAACCGGGGAGAACTTATCTGTAGAAAACGACAAAAGCAAGAGCACCTTTAAAAATGAAAGAGTTATCGATGAAACAGAGAGCGCCAAAGAAAGAACTGCAAGCAAAACAGAACAGCTACCTATAAGAAATTTTAAAGAGCATAATGCTTCAAGCTCTTTGCACAAAGGACCCAAACAGAGAAAGGGAAAGACTTTGCCATCAGGTGATTATCACATAAAGCGAATAAGTCAGGATCAACTCTCGCTAACAGACAACCATCTGTCTCCTGGTGAATATCAAGACAACAATCTTCAACATGTCCTTGCAACCGACAAAACTCAGGACAAGACGGCCATCAAACCTAAGGTATTAAACCATCCCCAAAGCATCATGGGCTTTAGAAATGGAACATCTCAGAAAAGACCAACTCACAATAGTAAAATGAGGAAAAAAACACACAATACAGTTCAATATCATGATGAGGCGACACGAGCAGGACAAAGTGTTGGTAAAATATGTGACGATTTCTCATGCGAAGTACCATCCCTCACAAAAACGCAGGCTGGAAAACAAAGAAATTCTATGAACAAGGAAAAGAGCAAATCATTCAAAGGAAAACTGATAGGGGCACCTGCGATTGGGAGGAAAGGTTTGGTAAAAAAGACAACTAGAAAACAACTAAGCGCTGCAAAGGTGATGATGACGATCAAGAATTCATTTACTCCCGGATTTAAGGACACAATGCCAGAAGCGACTCAATTGTGTGGTAAATACCATTGTGGAGACAGACTGGCAATTGATAATCATGCGTCCAATGAGAAGAAAAGAATAGTTGAGAACGTTATTAGCGACGAAAACAAATATCAAACAGCGCAAGGCAGGAGACTTCAAAATTTCTTCCCTGTAGCAAAGGGAATGAGACCTCAGTGTAATCTATCGAAAACTAAGGTGGGTGAGTCTTTAATCGTGTCCCCGGAGGATGCGTTCCTTTTGTTTAACAGCAATGACCAGCATTTGTTTACCGTCGATCAAAAAAGCATTAAGTTTGGACACAGCCCTTATGGGTTTTCGCCTGACTATGTCAACCACGGAAATGCTGTTGATGAAGAAGAGACTTGCAACAGCACAACTCACTGCGTGCGACCCCACAACACTTCTGATCAGATCTTAGGTAGGACATATGGATTATCTTTTAACTCTGCTCATCTGTCAAAGAAAATCGAAGAAAATCACTACGGAAATTACTCTCAAGAAAGGGTCAGCACACCTTTATCACAACCATGGATGCCGAGGAATGAAAAGCTAGGGATTGAATGGTCACTTAAAGAAAAAATTACGGTCGACAAAAAAACTAGCTCACTTGACGACCTGGAAGGCGATCTGCAAGAATCGCAGCTTGTGCCCGATACTTCAATTCATGCTGAACGTTATAAAGGAGCTTTTGATTTAGCAACTGTTTTCTTTGAAGGAACGAAAGAAAGGTATCACCACAAGATGAACTCAAAAGGAGAAAGCTCGGACAAGCATCGTAGAATAAAGAGGGAAACGTCAAGAATAGACAAAGAAACCAAAGAAAGTAGTAATTGTAAGTTTCTTCATAGGAGTTTGCCAATTAATCTCTTCGGGGAAGATGTGACCGCTAATTCTACCAATGGCAAGGACGAAGCTTCCACTAACACTAACGCCTGTTGGCAGACGTTAGATCACCGTGTGACATTAAAATATCAACCATTTGAACAATGCAGTAACACAAAAGAAAAGAACAAGGGAGAGGACGAATGTGAAAGTACTTACTTTCACGAAAGACCAGAATTGATTGCAGGACAACGAAAAAGGTACGCTTATGCAGTCATCGAGACTTCAACAGAGACGAAGCCGTATTTCAATTCTGATGTTAATGTCGTGTCTGCTAAAAGCGTAGAAACTTCGAGTAAGGACAAAGGAGCTAAAAGGAAATGTATATTTGACTTCGAGAAGTTATCCGAAAGCGATCGCATTCGCCATTTTAAACGTATTAGAGAGCTGACACATCTAGCTGAGGATCGACATCTTGATTGA

Transcript

amic_s0453.g4.t1

CGTATCACGTGCACGAATTTTAGTGCGAACACGTGTTGAGTATTTTCATTATGACGTCACAGAGTAACTAGCTTGTCGGTGGAAAATTGAAAAAGCGAAAAGCTATGACAACGCAAAGAAAGAGAAGGAAACAAAAGCTCACTATAAAGAACATTCCTGAGACAGAGCTGCCATTGTTCCGTGAGAGGCCATCAAGAATTGAGTATGCCGGGAAGAAGTTTGCCAAAGCCGTGTGCCCGTCGAATTTTGTCATAAACACGAAGTCAGAAGTTCTCAGCAGCTGGAGTGAAGATGAGAAAGATGTCTTTACTCAAAGATTTATTCAAATAGGAAAAGACTTTCCACTTATCGCCGTTGGCTTGCCAAATAAGACGGTCGCCCAGTGTGTTCATTTCTACTATATTACAAAACATGAGACATTTTACAAACAGCTACGGAAAATGGCAATGGAAGAGCAGCATATCACGCGGAGTTTTAAATCACGGGCTCTTCGGGGAAGAGAGACAAAAAAATCTAGCAAAGAGAGAGCTGGACTTCTTGGTAAAGAGATACCTAAGAGTAAAGCTGTGTGTTCCAGGCATAGTGACAATAATCAAAGGCTACGTACAACAAGATCGAGTGCCAGAACAACCGGGGAGAACTTATCTGTAGAAAACGACAAAAGCAAGAGCACCTTTAAAAATGAAAGAGTTATCGATGAAACAGAGAGCGCCAAAGAAAGAACTGCAAGCAAAACAGAACAGCTACCTATAAGAAATTTTAAAGAGCATAATGCTTCAAGCTCTTTGCACAAAGGACCCAAACAGAGAAAGGGAAAGACTTTGCCATCAGGTGATTATCACATAAAGCGAATAAGTCAGGATCAACTCTCGCTAACAGACAACCATCTGTCTCCTGGTGAATATCAAGACAACAATCTTCAACATGTCCTTGCAACCGACAAAACTCAGGACAAGACGGCCATCAAACCTAAGGTATTAAACCATCCCCAAAGCATCATGGGCTTTAGAAATGGAACATCTCAGAAAAGACCAACTCACAATAGTAAAATGAGGAAAAAAACACACAATACAGTTCAATATCATGATGAGGCGACACGAGCAGGACAAAGTGTTGGTAAAATATGTGACGATTTCTCATGCGAAGTACCATCCCTCACAAAAACGCAGGCTGGAAAACAAAGAAATTCTATGAACAAGGAAAAGAGCAAATCATTCAAAGGAAAACTGATAGGGGCACCTGCGATTGGGAGGAAAGGTTTGGTAAAAAAGACAACTAGAAAACAACTAAGCGCTGCAAAGGTGATGATGACGATCAAGAATTCATTTACTCCCGGATTTAAGGACACAATGCCAGAAGCGACTCAATTGTGTGGTAAATACCATTGTGGAGACAGACTGGCAATTGATAATCATGCGTCCAATGAGAAGAAAAGAATAGTTGAGAACGTTATTAGCGACGAAAACAAATATCAAACAGCGCAAGGCAGGAGACTTCAAAATTTCTTCCCTGTAGCAAAGGGAATGAGACCTCAGTGTAATCTATCGAAAACTAAGGTGGGTGAGTCTTTAATCGTGTCCCCGGAGGATGCGTTCCTTTTGTTTAACAGCAATGACCAGCATTTGTTTACCGTCGATCAAAAAAGCATTAAGTTTGGACACAGCCCTTATGGGTTTTCGCCTGACTATGTCAACCACGGAAATGCTGTTGATGAAGAAGAGACTTGCAACAGCACAACTCACTGCGTGCGACCCCACAACACTTCTGATCAGATCTTAGGTAGGACATATGGATTATCTTTTAACTCTGCTCATCTGTCAAAGAAAATCGAAGAAAATCACTACGGAAATTACTCTCAAGAAAGGGTCAGCACACCTTTATCACAACCATGGATGCCGAGGAATGAAAAGCTAGGGATTGAATGGTCACTTAAAGAAAAAATTACGGTCGACAAAAAAACTAGCTCACTTGACGACCTGGAAGGCGATCTGCAAGAATCGCAGCTTGTGCCCGATACTTCAATTCATGCTGAACGTTATAAAGGAGCTTTTGATTTAGCAACTGTTTTCTTTGAAGGAACGAAAGAAAGGTATCACCACAAGATGAACTCAAAAGGAGAAAGCTCGGACAAGCATCGTAGAATAAAGAGGGAAACGTCAAGAATAGACAAAGAAACCAAAGAAAGTAGTAATTGTAAGTTTCTTCATAGGAGTTTGCCAATTAATCTCTTCGGGGAAGATGTGACCGCTAATTCTACCAATGGCAAGGACGAAGCTTCCACTAACACTAACGCCTGTTGGCAGACGTTAGATCACCGTGTGACATTAAAATATCAACCATTTGAACAATGCAGTAACACAAAAGAAAAGAACAAGGGAGAGGACGAATGTGAAAGTACTTACTTTCACGAAAGACCAGAATTGATTGCAGGACAACGAAAAAGGTACGCTTATGCAGTCATCGAGACTTCAACAGAGACGAAGCCGTATTTCAATTCTGATGTTAATGTCGTGTCTGCTAAAAGCGTAGAAACTTCGAGTAAGGACAAAGGAGCTAAAAGGAAATGTATATTTGACTTCGAGAAGTTATCCGAAAGCGATCGCATTCGCCATTTTAAACGTATTAGAGAGCTGACACATCTAGCTGAGGATCGACATCTTGATTGAAACCTTACAGACAAGAACGGCCAAAAAAAAAAATCACTTCTCTAGGATTGCAAATGTTGCAAAAATTAATGTCACTTTCAAAAACTTACACAAATAAAAGTTATTACGCTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4KKX4	Nuclear receptor corepressor 1 OS=Xenopus tropicalis OX=8364 GN=ncor1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012506 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

No Pfam domain signature was detected for amic_s0453.g4.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR051571 all species →	Family	Nuclear receptor corepressor	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13992 all species →	NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0453.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.