Gene detail

Detailed information of amic_s0490.g7.t1 in Acropora microphthalma

Genomic Location: sc0000490_pilon:67726...74860
NR annotation: XP_029181530.1, arrestin domain-containing protein 17-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0490.g7.t1

GATGGCGATGGCTACTTGCGGCAGTGTCTTAAACTTGGTCAATTACAACGCAAATTTTAGTGCTATCTAATGGGAAAGGTAGACGTTTTTCAAGTTGCGTTTCGAGATGCAAAAACAACGTTCTTTCCCGGTGAAGTAATTAATGGAACCTTAAACCTTAAAGTAAATAGCGAGCTGAAATTGCGTGGCATACGTTTGGAATTTCATGGAGCTGCCAATGTTTTCCTGTCTTCCGGCGATCAGCGAAGAAAACGTCCAGCAAATAGTGAAGTGTACATCGATCTTGTCGCGACACTTTTCGGAAAGGCACCTGATGAAACTGGAGAAAACCCAGTGCTTCAGCCCGGAGAATACAACTTCCCATTTCAATTTCACACTCCAGCTCAAAATTTGCCAACCTCAGTTGAAGGAAACTTTGGTCATGTGCGATACTGGCTTAAAGCTTCCATAGATCGGCCCTGGAGGTTTGATATAACAACGAAATCGGTTTTTACTGTCATTGAATATGTGGACATCAATGCTGATGAAGAGTTGTTGCGTCCCTGTCAAGTTGATGAACAAGAGGGATTTGGGTGTTCTTGCATTCCTAAAGTAATACAAGTTACCGTGCAAACAGACAGAATTGGCTACTGTCCTGGAGAATCTATAGCTGTGTCAGCCTTTATCAGAAACCCAACAAATTACCGCATCAATGGTGTGGAGATCATTCTTTTTCAGAATTCCCTTTACACAATCAAGTCTGGTAAGCATTCCAGGCGAGTTGCAGACAAAGTATCTTCAGTGAAAAGAGATGAGACGAGTGGGAACGGTGACCTTCATATGGAGATGGTGCCCTTTCCTATCCCTTCCCTCCCCCCCACAATGAAGAGTTGCAGCTGTATCAAGATTACCTATGAATTAAAGTTTATTGTTCATGTAGCCAGTGGATTCTCGACAAAGAAGATAGTTTCCACAATTCCTATCACGATTGGTTCTGTGCCATATCGTTACCCGGCCCTACCACCATCATTAGAACCCTCAGCACCACCTCTTTCCCCTCCTGTGTATAGCGAGGATGCTCAACCTTATCCAGTTCTGCCATCATATGCGGAGTGTGTTAATGGTGGAACAGCTGTCCAAGAGGAGCGTGATACAGGTGATATGAGTCCATCAACATTCACCCCAATGTATCCATTTGTGAATGATTACCAGTTCCCCTCTGCTCCCAGCCAACAGGCAGCAGCAGCACAGGCCCTACCAGTGTCCTCTAGTAAACCGAAAATTCCATCGGATACGCTCAACTAGAAACGACATCATGAAGGCGCTGACATTTTTCTTCTTTCAACTTGAGACGTTTCCCTGTGTAACTAAACGCCAAATTGAGAAATTGTTTTATAGCAAAGGTGCAAGAAGCATTGCATGGGCTACTTTTTTGTATCAGGCAAGGAGGCTCaatagctgttattcagttttgcatgcatgcaaaacgttttttgttcaacacgaggcttatgcgtcaatacagtggaaaataaccgactgggcttggttatgtgtcaaaaccgctgtcataacagctattgattctaatttctaCATTTGTTTTCTTTGACTTGTCGTAGCTTAACAATCTGGGTCAAGTCACGTTGTTCTTCCGTAGTACAGTTTCGATGGTTAGTTAAGAATTATTTTAGTTGGAAAACTCTAATATTTGGTGCTGCTATTAAATCTTAAACTTCCATGAGGAATTAAAACAAAATCATAGGCTGACTTTTCTGCGCAGCATTAAGTGGATAGGTCCCAAGGATGTACATTTTAGTAAGTGAAAATTGTAGAATTGATAGTTCTACAGTTCCAGGAATGAATTGGACTAGATTTGAGTTGAAGTAATTGGAAttaaaGTTATAATTGCAGTTTTAGTGATAAAATAATTTTTTGGAGGATAAAGAATGACATGACCCTCGTGCAATTGAAATTAAAGCTAAGTGCGTTCGGTATTTCTTATGATGGAGTTATTTTGAGTGATTTTTGTCACAGTGTGCGGGATCATACGCTAAGGGACTGGGGTATAGCTCTGTTTGCATTACGGGGCCTCCGCCATCTTGTAAATATACATATGTGCACGAGTAAAGTCTTGTTCGCAATTTACCTGATATTCTGGCAGTCTTCGTTGGTAAAATTTTGACAGTTTTATGACCTCATTACAATCTATGACAAGGAGGCAAGATATCCAATATTTTCGTCTTCAACTCTTCATCCAGTTCTTACATCACACCATTGTTGTATGAGTCGGCGATTTGTTTTAAAAATATGAAAGTTGGAGCCAATCCTTAGATATGACAATATTGCAATTTAATAAATGCCTATCAAGGGGAAAAAATGGAGGTAATCTAGAGCTTAAACAAAGAGGACAACGGCGGTTGTGATTAAGGACGTCATCTATATTGATGACCTAGTTACTATAATCAAGGTATAATGAATTGGTTAAATCATAACCACCAGAGAATTAAACTGGTTTCTAAGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O45782	Arrestin domain-containing protein 17 OS=Caenorhabditis elegans OX=6239 GN=arrd-17 PE=1 SV=2
P78612	pH-response regulator protein palF/RIM8 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=palF PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000655 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00339 all species →	Arrestin_N	Arrestin (or S-antigen), N-terminal domain	Domain	Interproscan
PF02752 all species →	Arrestin_C	Arrestin (or S-antigen), C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011022 all species →	Domain	Arrestin C-terminal-like domain	Interproscan
IPR014752 all species →	Homologous_superfamily	Arrestin-like, C-terminal	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011021 all species →	Domain	Arrestin-like, N-terminal	Interproscan
IPR050357 all species →	Family	Arrestin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11188 all species →	ARRESTIN DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26229	ARRDC2_3; arrestin domain-containing protein 2/3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.