Gene detail

Detailed information of amic_s0506.g1.t1 in Acropora microphthalma

Genomic Location: sc0000506_pilon:1...6275
NR annotation: XP_015765691.1, PREDICTED: RNA polymerase II-associated protein 3-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000890 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10579 all species →	Rapsyn_N	Rapsyn N-terminal myristoylation and linker region	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052769 all species →	Family	Tetratricopeptide repeat domain-containing protein	Interproscan
IPR019568 all species →	Domain	Rapsyn, myristoylation/linker region, N-terminal	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46014 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0033130 all species →	Molecular Function	acetylcholine receptor binding	Interproscan
GO:0043495 all species →	Molecular Function	protein-membrane adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0506.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.