Detailed information of amic_s0508.g5.t2 in Acropora microphthalma

Genomic Location: sc0000508_pilon:55783...77875
NR annotation: XP_044173044.1, uncharacterized protein LOC114961777 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q80XU8Leucine-rich repeat and fibronectin type-III domain-containing protein 4 OS=Mus musculus OX=10090 GN=Lrfn4 PE=1 SV=1
D4ABX8Leucine-rich repeat and fibronectin type-III domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Lrfn4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000105 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF00431
all species →		CUBCUB domainDomainInterproscan
PF13855
all species →		LRR_8Leucine rich repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000859
all species →		DomainCUB domainInterproscan
IPR035914
all species →		Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR050467
all species →		FamilyLeucine-rich repeat and fibronectin type-III domain-containingInterproscan
IPR003591
all species →		RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR009030
all species →		Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45842
all species →		SYNAPTIC ADHESION-LIKE MOLECULE SALMInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0508.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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