Gene detail

Detailed information of amic_s0546.g3.t1 in Acropora microphthalma

Genomic Location: sc0000546_pilon:34200...38385
NR annotation: XP_029183608.2, uncharacterized protein LOC114951617 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0546.g3.t1

GCTCCGGAGTTCCATAGTAAATGTAGCATATATGAATAAAATGGACAGAAGAGATCAGTACAAGAATAGCAGTGTTAAGGTATCATCCAAGAGAGATAAGCGACGTGATCAGGAAGTGGAGCTTCGAAAAGAAAAACGCGAAAAATTGTTCAGCTTGAAACGCATTCGCTTCTCCGAAGATGCTGACAGCGACTGCGATGTTGAAGACTATACTGCAAGTCAAGTAAAGGAACTTGCAAGAGCAATACAGAAATCAGACAAAAACAATCTAAACAATCTTAAAATATTACGTAAAGCGTTTTCTCAAGGAAGCGAAATGATCGGTGCTTTTCTGAAAGAAGAGAATAGTTTGAGAGCTCTTGTTGGACATTTGACATGCAACAATGCTGAGTTCCAACTCGAGGCTGCATGGTGTATAACTAACTTAGCGACAGGAGTACACGAGGACACACTGAAAGTGCTTAAAGCTTCAGCTGCCTATCTAATCACATATCTCAGTGGACAAAATGTTCAACTCCAGGATCAATGTGCTTGGGCCCTAGGCAACTTCTCTGGGGACTCACAAGAATGCAGGGACATATTACGGGCACAGGGAATTGTTGTACCCATGGTCAATCTATTAAAGTGCCCTGTGTCAACCGTTGTACAGTCAGCAGCATTTGCTTTGTCCAATCTTGCGAGAGGAGAGCAAGTTGTGGCTGAGGAGATGATATGTGCAGGAATAGCACCTTTGATTCTTAATTTACTCAGTCCAGGAAAACACACAATTGATGTTGTTGGAGAAGTTGCCTGGGTCCTTTCGTACTTAACAGCAAAGCCTGACTGCGTTCCAGTGTTTGTCTCTGGTGGCATCATCTCAATTCTTGTGTCTTTCTTGAATTCACTTGCTCAGGAATCACCTCATAAAAGCCAGGTAGTGACGCCAATGCTGCGAAGCCTTGGTAATGTGGTAAGTGGTCCTGATGAATATGGAGCATTAGCTATGCAGAGTGGTGAGCTGGTCATTGCCATGGCATTGTACTTGCAGTCTTCTCATCGACATATAAAGAAAGAGTGTTTGTGGGTATTGTCTAATCTTACAGCGGGACTAGCACAACATGTGGACATGTTAATCCAAGCTGGAATACTACCTCTCATCATTGACTTGATGTCAACTTCATTTGACATAAAGACGGAGGCTTCCATTTGTGTGTGTAACATTTCTTACCATGGACCCAAGTATCTAAAGGCTGTGTTAGAGTTAAATGCCATGAATGCATTCATCAACTTTCTTAAGTCACCTGACCATGACACAGTAATTACCGGTCTTCAATTTGTTGAGATGGCACTTAGAAATGTTTCAGCCGCCAAAGAAATGTTTGAAATGTCTGAGGGGATAAGCTGTTTGGAAGCATTAGAATACAGTTGCAATGGAACAGTGGCACAGTATGCAAATGAATTACTCGATACATACTTCATGGCAGAGGGAGAAACTGATGGCGCCCAACAAACTGTTCCGGTCGTGAAAACTTGAAGACTGTGAAGTGTGCATTTAACTCGATAAACGAACAGCTAAAACTATGAAACGAATTTTTTTATAAGATCGCTTGAGTTTGTTTACAATATATATAATGAATTCACCGGTGCGTCATGTATTTTTCCCCGCGAAAATTTAAAGCTACAACGAGGAAACAAAAACTAGGGAGCATAAGCAAAGAAAATAAACAGAAATTTTTTTCGTTCGCTTGGAAGTTTTGCGCTTGCCGTTGGGGGAAATGTTCCTCAGTTTTAGGTCTTCTTGATGTTCAAAATTTTTTTTTTCGGAAATCCTGGGAATTCTTACGAACAGTTTAACTGAGTTATGTCGGTAGAATGATCGCTCGCGTTTGAATTTTCCAGGAATGCTAAAAGTAAATTCAGAAATAGAATGTTACAAAGATTGCAGCAAATAAGTGGAAATAGCAAGAGCTGCAGATGTGCAAGCGTACGAAGCAAAAGCGATGGTAAACACTTCTTGATACATTTATCTCTATTGTCCACTATTAAACAAAGAAACTGATTTTGAGGAATGAGTATTTGCGCTGTTTGAATCCGTAGTAAATACATTTTGCAATGTTTGTGCTATAATTTTTTTTTAGCGCGGATAACATTGTAATAGTGGTGCTGGGCTTGCCATTCGAAAAGAAAAGTAGCATTCCCTTTTATGTTCAAGTTTGCAAGCGACTCGTTGTTTCAAATGAACCTATACGTAATCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SLX0	Importin subunit alpha-1b OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0155601 PE=1 SV=2
Q9FJ09	Importin subunit alpha-5 OS=Arabidopsis thaliana OX=3702 GN=IMPA5 PE=2 SV=1
Q71VM4	Importin subunit alpha-1a OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0253300 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007535 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF01749 all species →	IBB	Importin beta binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024931 all species →	Family	Importin subunit alpha	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR002652 all species →	Domain	Importin-alpha, importin-beta-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16356 all species →	TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0546.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.