Gene detail

Detailed information of amic_s0548.g5.t1 in Acropora microphthalma

Genomic Location: sc0000548_pilon:47096...51061
NR annotation: PFX19398.1, hypothetical protein AWC38_SpisGene16183 [Stylophora pistillata]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0548.g5.t1

atggactaccagattcccgagagcaaaccatgcacacgtttaatttttactctttccttggccggctttttgtgtggcgtccgtttgctttatccatcggtggcctataccggagaagatgacgaaaactctgtttgtgcaaattctggtagccataaaggttGTTTTGCGTCGAAAAGACGCTTGAGCGTGGTGAAAAATCTTGTGAGGGCAACTGAGGAAAAATTCCAGGAAAAACAAATTGATACTGAGGAAGAGGACATTGAGCCCCCCAAGAAAACAGTGACCAGGTCAAAACAGCAAAACATAGAGGAAGAGGACGTTCAAATGTTATCAGGGACACGAATTGTGAACATGGAAGTGCTAAAAAATGACCTCAAGTCTTGTTTACATTGTCAAGCAGGTCCATTGTCTTTGAACAACATGGTTGCTGAAACAAGAAGTGGGCTAAGTAGTGTTTTCAACATTAAGTGTTCCAAGTGTGGAAAAATAAACAATGTTCATACATCTAATCATCACAGAACAGGTAGCAGAGGGCCAAAAGCCAGTGACATTAATTCTAGAGCAGTTCTTGGCTCACTTCATATTGGAGTTGGACAGACACAACTGAATAATTTTCTGGCTAGTTTAAACGTTCCAACAATGAATAGCCAACTGTTCAAAATGCGAGAAAGAGAAATAGGTAACAGCATTGAAAAGGTAGCAAAAGCAAGTTGTGATGTGTATATGGAACAGGAAAAGGAAAATGCAGAAAAATCTTACAATCAGGGGGAAGTAGATAGTATGCCAGGAATTGCAGTATCATACGACATGGGTTGGACGAAAAGAGGCAAAGGGCACAACTCACTCACTGGTCACGAAGCATCAATGGGTTTAAAAACTGGAAAGGTTCTGTCTTATGCGACAAGATGTAAAGCCTGCAGAATATGTGAATCAAGCAAAAAATCGGGAAAAGTGGCCAAAACACATGACTGCAGAAAAAACCATGTTGGGTCCTCAAAGTCAATGGAGAGAGATGTAGCAGTTGAGCTTTGGACGAATGCCCTTGACAGTGGAACCAAGTTCAGCACATATGTTGGAGATGACGATAGTACCACTATTGCTGATATTTTAAACAAAGTGCCATACAAAGTTGAAAAGTGGTCAGACACAATACATACCAAATGTTCTCTCACCACTCGTCTTTTCAATCTCAAAGATCGCTTCAAAATTCAAAACTGTTCAACACTGAGCAACAAAGTAATAAATTACTATGCAAAATGCTTTAGTTATGTTGTAGCTCAGAATGCTGGAAATCCAGAACTCTTAAAATCAGGAATCAACTCCATAGTACCACATTCATTTGGGGAACACAGTTTGTGCGATATATCCTGGTGTGGTTTCCAAAAATGTCCTGAGAGATACAAGCACACAGACCTACCAAATGGAAAGAGTTTATATGGTGAGCCCCTGAAAAATGCCCTAACTAACATCTTTTCTGAATATGCCACTGATATTGTTGTCAAAAAGCTTTCCCCATGTGCCAACTCTCAACGGAATGAAAGTCTAAATAATACCATAGCAACAAAAAACCCCAAAACTCGGTATTATGGAGGAAGTGTGAGCAACGACTTCAGAGTAGCCTGTGGTGTGGCCCAAAGAAATCTTGGCTATGGGTATGTGAGTACAGTGTTAGAGGTACTGAATATTGAACCCGGCTGTTTTTGTACATCACACGAAGATCTGATGGACAAAAAAGTGCTCAGTGACAGAACCCGAAAGGCTACAAAAAAATTCAAGTATAGGAGAAATCAATTACGGGGTCAGAAATCCAATCAAAATAGTCAAAACGAAGCTAAGGAGGGGAAAACTTATGAAACTGCAGTTGCTTTGAATCTGGATACAAGTGTCAATCAGCCTACACCAAGAACTTGCACTCACAATGAACATCTTTTGGAAAACATTTCTGATAATGAGCTTCACAAGTATGAAAAACTAGTGCCATCTTACTATGCTCAGCCTGATCTGCCAAAACTAACTTATGATCCAAACCAAACTTACAATTTTGTTGTTTTTGACACCGAGACTACCTGCACCGGGAAAAATGCAGAACTCTGTCAGCTCTCCGCCATTCAAAAAAATCATGTGTTTTCGAAGTACATTCTACCGTCAGGAAATGTGAGTACCGGACCTTCGCGAGTGAACAAACTATCTGTACAAAATATCAATGGAATCAGAAAATTATTGAAAGAAAACCAACCAGTGGAAACTGTCTCTCTTGATAAAGCGCTTCAGGAGTTTCATACCTTCCTTAGTCAAGTAAAATGTTCATCCCAGAAGGAATCCTGTATAGTTCTAATAGGTCATAATTCATCAACATTTGACACGCCAATACTTCTCCGGAAAAGCAACGAAATTTTTCGCCGCAAACTAAGGAACCTGAATGTTTATTTTGGCGACAGTCAAATCCTTGTCAAACATCTTTTAAAAAATAAACACCCGGCCTTGCAACTCAGTGAATCAACATCTTGTAAATCAAACCAATCAGCACTATACTCGCATCTTTTTAAAGAAGAATTTGAAGCCCACGATGCCTTAGAGGACGTCAAGGCACTTACAAAAATTCTGTTTCATTCCGCACTTCAACTGAACAAGGAAAAACTCGTGAATTGTTCTGGAGTTATTAGTGTTGAACAAGCCATTTCCAGCATGTCGTATTTGGATAGACACCATGAAATTCTCCAGACATTCAGCGGAAGACTTTTCGACCCCAGGGACGACAATGGCACAATAAAACAATCAATGGCTCAGAAGATTGCAGGAAGTGGGCTATCCTATTCACATCTCAAAGAGTTGTATTTAAAGTTCGGAACAAAGGGACTGCTTGCGATCCTCAGCATGCCTCCTTCCCAGAGCACAGCCACGAAACCTCGTGTTACTCGCACAAAGCGTATTCTCGATGCCATTGCAAACCACTTTCAGGAAACATTTCCGAACACAGAGTAG

Transcript

amic_s0548.g5.t1

tttaggactgggttctagcctggcgaatcacgcgcgtcactcacgggatttttaaaggccatggagaatgtaaacaaacatggcggcgcataatttttctagtcgaactctattcatgtctagttttcagggtaaatcgcgtttttgggaaatttttagccgccaaaagtctatatctgtgctattagctaaagaaagaaatgtttgccgatcaacatatgtggtgccacgaacaaaattttgtagcttttatgtacgcgcagcgatcgatcgtaaagactctggaatggactaccagattcccgagagcaaaccatgcacacgtttaatttttactctttccttggccggctttttgtgtggcgtccgtttgctttatccatcggtggcctataccggagaagatgacgaaaactctgtttgtgcaaattctggtagccataaaggttGTTTTGCGTCGAAAAGACGCTTGAGCGTGGTGAAAAATCTTGTGAGGGCAACTGAGGAAAAATTCCAGGAAAAACAAATTGATACTGAGGAAGAGGACATTGAGCCCCCCAAGAAAACAGTGACCAGGTCAAAACAGCAAAACATAGAGGAAGAGGACGTTCAAATGTTATCAGGGACACGAATTGTGAACATGGAAGTGCTAAAAAATGACCTCAAGTCTTGTTTACATTGTCAAGCAGGTCCATTGTCTTTGAACAACATGGTTGCTGAAACAAGAAGTGGGCTAAGTAGTGTTTTCAACATTAAGTGTTCCAAGTGTGGAAAAATAAACAATGTTCATACATCTAATCATCACAGAACAGGTAGCAGAGGGCCAAAAGCCAGTGACATTAATTCTAGAGCAGTTCTTGGCTCACTTCATATTGGAGTTGGACAGACACAACTGAATAATTTTCTGGCTAGTTTAAACGTTCCAACAATGAATAGCCAACTGTTCAAAATGCGAGAAAGAGAAATAGGTAACAGCATTGAAAAGGTAGCAAAAGCAAGTTGTGATGTGTATATGGAACAGGAAAAGGAAAATGCAGAAAAATCTTACAATCAGGGGGAAGTAGATAGTATGCCAGGAATTGCAGTATCATACGACATGGGTTGGACGAAAAGAGGCAAAGGGCACAACTCACTCACTGGTCACGAAGCATCAATGGGTTTAAAAACTGGAAAGGTTCTGTCTTATGCGACAAGATGTAAAGCCTGCAGAATATGTGAATCAAGCAAAAAATCGGGAAAAGTGGCCAAAACACATGACTGCAGAAAAAACCATGTTGGGTCCTCAAAGTCAATGGAGAGAGATGTAGCAGTTGAGCTTTGGACGAATGCCCTTGACAGTGGAACCAAGTTCAGCACATATGTTGGAGATGACGATAGTACCACTATTGCTGATATTTTAAACAAAGTGCCATACAAAGTTGAAAAGTGGTCAGACACAATACATACCAAATGTTCTCTCACCACTCGTCTTTTCAATCTCAAAGATCGCTTCAAAATTCAAAACTGTTCAACACTGAGCAACAAAGTAATAAATTACTATGCAAAATGCTTTAGTTATGTTGTAGCTCAGAATGCTGGAAATCCAGAACTCTTAAAATCAGGAATCAACTCCATAGTACCACATTCATTTGGGGAACACAGTTTGTGCGATATATCCTGGTGTGGTTTCCAAAAATGTCCTGAGAGATACAAGCACACAGACCTACCAAATGGAAAGAGTTTATATGGTGAGCCCCTGAAAAATGCCCTAACTAACATCTTTTCTGAATATGCCACTGATATTGTTGTCAAAAAGCTTTCCCCATGTGCCAACTCTCAACGGAATGAAAGTCTAAATAATACCATAGCAACAAAAAACCCCAAAACTCGGTATTATGGAGGAAGTGTGAGCAACGACTTCAGAGTAGCCTGTGGTGTGGCCCAAAGAAATCTTGGCTATGGGTATGTGAGTACAGTGTTAGAGGTACTGAATATTGAACCCGGCTGTTTTTGTACATCACACGAAGATCTGATGGACAAAAAAGTGCTCAGTGACAGAACCCGAAAGGCTACAAAAAAATTCAAGTATAGGAGAAATCAATTACGGGGTCAGAAATCCAATCAAAATAGTCAAAACGAAGCTAAGGAGGGGAAAACTTATGAAACTGCAGTTGCTTTGAATCTGGATACAAGTGTCAATCAGCCTACACCAAGAACTTGCACTCACAATGAACATCTTTTGGAAAACATTTCTGATAATGAGCTTCACAAGTATGAAAAACTAGTGCCATCTTACTATGCTCAGCCTGATCTGCCAAAACTAACTTATGATCCAAACCAAACTTACAATTTTGTTGTTTTTGACACCGAGACTACCTGCACCGGGAAAAATGCAGAACTCTGTCAGCTCTCCGCCATTCAAAAAAATCATGTGTTTTCGAAGTACATTCTACCGTCAGGAAATGTGAGTACCGGACCTTCGCGAGTGAACAAACTATCTGTACAAAATATCAATGGAATCAGAAAATTATTGAAAGAAAACCAACCAGTGGAAACTGTCTCTCTTGATAAAGCGCTTCAGGAGTTTCATACCTTCCTTAGTCAAGTAAAATGTTCATCCCAGAAGGAATCCTGTATAGTTCTAATAGGTCATAATTCATCAACATTTGACACGCCAATACTTCTCCGGAAAAGCAACGAAATTTTTCGCCGCAAACTAAGGAACCTGAATGTTTATTTTGGCGACAGTCAAATCCTTGTCAAACATCTTTTAAAAAATAAACACCCGGCCTTGCAACTCAGTGAATCAACATCTTGTAAATCAAACCAATCAGCACTATACTCGCATCTTTTTAAAGAAGAATTTGAAGCCCACGATGCCTTAGAGGACGTCAAGGCACTTACAAAAATTCTGTTTCATTCCGCACTTCAACTGAACAAGGAAAAACTCGTGAATTGTTCTGGAGTTATTAGTGTTGAACAAGCCATTTCCAGCATGTCGTATTTGGATAGACACCATGAAATTCTCCAGACATTCAGCGGAAGACTTTTCGACCCCAGGGACGACAATGGCACAATAAAACAATCAATGGCTCAGAAGATTGCAGGAAGTGGGCTATCCTATTCACATCTCAAAGAGTTGTATTTAAAGTTCGGAACAAAGGGACTGCTTGCGATCCTCAGCATGCCTCCTTCCCAGAGCACAGCCACGAAACCTCGTGTTACTCGCACAAAGCGTATTCTCGATGCCATTGCAAACCACTTTCAGGAAACATTTCCGAACACAGAGTAGTTCTTTTGCCTCCATTTTTTGGTAAGTTGTAAATTCATGTTTTTCCATTTAACCACATTTAAACTGTAGAAACTGGCCAGCACGTGTTGTGCTTCTGGAGATGCTTAATAAAAATGTAAGTACCTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000127 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR040393 all species →	Family	Three-prime repair exonuclease 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13058 all species →	THREE PRIME REPAIR EXONUCLEASE 1, 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000738 all species →	Biological Process	obsolete DNA catabolic process, exonucleolytic	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008296 all species →	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14570	REX1, REXO1, REXO5, RNH70; RNA exonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.