Detailed information of amic_s0572.g1.t1 in Acropora microphthalma

Genomic Location: sc0000572_pilon:1...12415
NR annotation: XP_015748241.1, PREDICTED: ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X4 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1RMU2Ubiquitin carboxyl-terminal hydrolase CYLD OS=Bos taurus OX=9913 GN=CYLD PE=2 SV=1
Q9NQC7Ubiquitin carboxyl-terminal hydrolase CYLD OS=Homo sapiens OX=9606 GN=CYLD PE=1 SV=1
Q5RED8Ubiquitin carboxyl-terminal hydrolase CYLD OS=Pongo abelii OX=9601 GN=CYLD PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001326 (this species only) · gene tree & orthology
Ubiquitin familyDUB|USP|USP · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01302
all species →		CAP_GLYCAP-Gly domainDomainInterproscan
PF00443
all species →		UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000938
all species →		DomainCAP Gly-rich domainInterproscan
IPR001394
all species →		DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR028889
all species →		DomainUbiquitin specific protease domainInterproscan
IPR036859
all species →		Homologous_superfamilyCAP Gly-rich domain superfamilyInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11830
all species →		40S RIBOSOMAL PROTEIN S3AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579
all species →		Biological Processprotein deubiquitinationInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0061578
all species →		Molecular FunctionK63-linked deubiquitinase activityInterproscan
GO:0070536
all species →		Biological Processprotein K63-linked deubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08601CYLD, USLP2; ubiquitin carboxyl-terminal hydrolase CYLDEC:3.4.19.12
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP