Gene detail

Detailed information of amic_s0580.g1.t1 in Acropora microphthalma

Genomic Location: sc0000580_pilon:5164...7545
NR annotation: XP_015778947.1, PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0580.g1.t1

atgtttttaaaacacgtttcattgcagctcagtctaagaacattagcaagaacggtatttacgcgcacagacgagcattcaggattcaatcttctccaggcagctgtcttagaaggagattatgacactgtcaccaaagcaagtgctcatctagagaactttgtagaggagatgaactgccgaataagtggtgagaaggcttatattttccccggaaagtcagcagctgagattttgtcagccgttagagggacgaagggaagtcattatcgcattggcacactctacgaagaaatcgttgacactgacttaacacttactaagctgcactcatgcgccaggaggaatgacgtagaaacggcgattgaactcgttttgaatgataggatggatgtcaatgtcgctgcaaagagaaacatcacgcctttgctttgggcgagtcaacgggcctcaagtttgtcaatcaaaaccctgattgatcttggtgcagacgtaaatgctcaaacattccaggagagcactttgggcttctgcagtagaaccgcacttctttcagcaatccatggcaacaatgcagctgtcgttaaagtgttacttgcaaataaggcggatgctaatgttgctgacttagaaggaaatacagttctacattcatctacttgcaagcggtttttcaacatttcaatgttgctgatagagtccggctgtgaaatcaatgtgagaaacaacaagcgtaaaacaccgctttattatgctgttcttggttcgaatgaagctgctgttaagcttttactgaagaacaacgcagacgcgaatattcaggacacatcggggaataccccacttcatatatctacacgtaaggaatattttaacgtttcacagttgttgatagagtccggctgtgaaattaatgtgagaaactacagtggtaaaacgccactttattttgcagtccttggcaaggatgtagttcttgtgaagttttttcttaagaacaatgccgatgcgaatattcaggacacattgggaaacacccctcttcatatatctacgcgtgagagattttccaacatttcacaggtGctggtAtActctggttgcgaagtcaatgtgagaaacaacaggggtgaaacgccactctatcgtgctgttcttggtaagaatgAAGGTGATGTAGAGCTTTTACTTAAGAACAACACGGATGCGAATATTGAAGACACTTCGAGAAATACCCCTCTTCATATATCTACGCTTAAGGGATTTTCTAACATTTCAGAGTTGTTGATAGGCTCTGGCTGCGAAGTCAATGTGAAAAACAGCGAGGGTGAAACGCCACTCTATCGTGCAGTTCGTGGTAAGAATGTAGCTGATGTTAAGCTTTTACTGAAGAACAACGCGAAAGTGAATATTCAGGACAGTTCGGGAAATACCCCTCTTCATATATCTACGGGTGAGGGATTTTCCAACATTTCACGGTTGTTGCTAGATTCTGGCTGCAACGTCAATGAGAGAAACAACGAGGGCGAAATGCCTCTTTCTTGTGCTGTACTTGGCAACAATGCAGCCGATGTTAAGCTTTTGCTTATGAATAATGCGGATGCAAATATTCTGAACTCGTCGGGAAATACTCCTCTTCATATATCTACCCGTATGGGATTTTCCAACATTTCACAGTTGTTGGTAGACTCTGGCTGCGAAGTCAATGTGAAAAACAACATAGGCGAAACGCCACTTTATCTTGCTGTTTGTGATTCTGGCTGCCAAGTCAACTTGGCAAACATTAGCGGTGAAACGCTACTTCATTCTGCTGTCCGCGCTATGAATACAGCTGATGTTAAGCATTTGCTTACGAACAACGCGGATGCGAATATTCAGGACACATCGGGAAATGccccgcttcatatatctacgcatgagagattttccaatatttcaaagttgttgatagacactggctgcaaaattaatgtgagaaacattatgggcgaaacgccacttcattctgttgttcgtagtgggaatgccgctgttgttgaactttgcttaagaacacggtggattcgactatccaggacagatggggaaagacacttcttgatatatcgaaggaggagggactttataacatttcacaattgttga

Transcript

amic_s0580.g1.t1

gtgacgaccccatttatttgctttgggacatttgcagtaagattctcatcagaaggaaaataaatcgatgtttttaaaacacgtttcattgcagctcagtctaagaacattagcaagaacggtatttacgcgcacagacgagcattcaggattcaatcttctccaggcagctgtcttagaaggagattatgacactgtcaccaaagcaagtgctcatctagagaactttgtagaggagatgaactgccgaataagtggtgagaaggcttatattttccccggaaagtcagcagctgagattttgtcagccgttagagggacgaagggaagtcattatcgcattggcacactctacgaagaaatcgttgacactgacttaacacttactaagctgcactcatgcgccaggaggaatgacgtagaaacggcgattgaactcgttttgaatgataggatggatgtcaatgtcgctgcaaagagaaacatcacgcctttgctttgggcgagtcaacgggcctcaagtttgtcaatcaaaaccctgattgatcttggtgcagacgtaaatgctcaaacattccaggagagcactttgggcttctgcagtagaaccgcacttctttcagcaatccatggcaacaatgcagctgtcgttaaagtgttacttgcaaataaggcggatgctaatgttgctgacttagaaggaaatacagttctacattcatctacttgcaagcggtttttcaacatttcaatgttgctgatagagtccggctgtgaaatcaatgtgagaaacaacaagcgtaaaacaccgctttattatgctgttcttggttcgaatgaagctgctgttaagcttttactgaagaacaacgcagacgcgaatattcaggacacatcggggaataccccacttcatatatctacacgtaaggaatattttaacgtttcacagttgttgatagagtccggctgtgaaattaatgtgagaaactacagtggtaaaacgccactttattttgcagtccttggcaaggatgtagttcttgtgaagttttttcttaagaacaatgccgatgcgaatattcaggacacattgggaaacacccctcttcatatatctacgcgtgagagattttccaacatttcacaggtGctggtAtActctggttgcgaagtcaatgtgagaaacaacaggggtgaaacgccactctatcgtgctgttcttggtaagaatgAAGGTGATGTAGAGCTTTTACTTAAGAACAACACGGATGCGAATATTGAAGACACTTCGAGAAATACCCCTCTTCATATATCTACGCTTAAGGGATTTTCTAACATTTCAGAGTTGTTGATAGGCTCTGGCTGCGAAGTCAATGTGAAAAACAGCGAGGGTGAAACGCCACTCTATCGTGCAGTTCGTGGTAAGAATGTAGCTGATGTTAAGCTTTTACTGAAGAACAACGCGAAAGTGAATATTCAGGACAGTTCGGGAAATACCCCTCTTCATATATCTACGGGTGAGGGATTTTCCAACATTTCACGGTTGTTGCTAGATTCTGGCTGCAACGTCAATGAGAGAAACAACGAGGGCGAAATGCCTCTTTCTTGTGCTGTACTTGGCAACAATGCAGCCGATGTTAAGCTTTTGCTTATGAATAATGCGGATGCAAATATTCTGAACTCGTCGGGAAATACTCCTCTTCATATATCTACCCGTATGGGATTTTCCAACATTTCACAGTTGTTGGTAGACTCTGGCTGCGAAGTCAATGTGAAAAACAACATAGGCGAAACGCCACTTTATCTTGCTGTTTGTGATTCTGGCTGCCAAGTCAACTTGGCAAACATTAGCGGTGAAACGCTACTTCATTCTGCTGTCCGCGCTATGAATACAGCTGATGTTAAGCATTTGCTTACGAACAACGCGGATGCGAATATTCAGGACACATCGGGAAATGccccgcttcatatatctacgcatgagagattttccaatatttcaaagttgttgatagacactggctgcaaaattaatgtgagaaacattatgggcgaaacgccacttcattctgttgttcgtagtgggaatgccgctgttgttgaactttgcttaagaacacggtggattcgactatccaggacagatggggaaagacacttcttgatatatcgaaggaggagggactttataacatttcacaattgttgatagactctggatgcaaCAAAAGCCTGTAAATCTCGAAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24118 all species →	POTE ANKYRIN DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0580.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.