Gene detail

Detailed information of amic_s0606.g1.t1 in Acropora microphthalma

Genomic Location: sc0000606_pilon:1...7960
NR annotation: XP_044166394.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114951914 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amic_s0606.g1.t1

tgtcgtgaaagttatattgctaggatctttcaattactgtcttacttggacaccttcacagagacctctacagcaccagatcaagctgttgcagcagttaacttgggtgaacaaggacctagttcagtttcagaatcagtttcctatcctgatgcaacgacaatacatcacattgtgggtgatgcagtgagctcaggcagagaaaatgtcttcagcgataagtcagttgttgtgaaggtgctgaaagcagagtacaacagacgagctcaattgaggccacttttctgggacagcacgatacaattacctcttgaaaaggtctacacaagattgaaaattgtctcaagagggagaggaggtaatcaaggggaaaccgagcgctggagtgatgtaatctgggctgaggactccgggcgagatgagatttgggcgaaagcacgggctaataaggcgaaacggtgcggtatctttggtctgttaaaggaaaataaggacttcatgacaattgtggagggaagtccaggaattggtaaaacaactttctgtcttaaacttgcctatgactgggcaaatcaaagcagctctgcggcacattttccagagttcgaactagttttgctgttaaaatgtcgagatattgatggagatctaacggaagccatcacgaagcaactttttccaaaggatatcagcgaagatgccagggaagagctttttcgtttcttggaggatattgaaaatcaagagagagttttaattattttggacggcttggacgaactgccagaaaaatcgaagcattacgcggatgatcttctccacagagaaaggtgggctttctgttatgtgttagccactacgcgacaagaggaaggaattgaagtccgaaaacaccctgactttgtgtttgatttatttctacaaattgaagggttcactgaagaggactcgtttgagtacatcaggagacatttcaagaatgctggcctggagcactcatccaagggggagaagcttatagaagaaataaaaaaaaatgcactcctgcaagacctgcgaacaaatccattaaatttacttcttctttgcgttgtttatgaagatcatgaaggagaactgccatcatcccgaactgaactctaccatgtaattgtcgtgtgtcttttgagaagatattgtgcgaaacatgatgtgaaggctagtaaaacggacagggacttggagacacaatttaaaagggacatccgttgccttggagagctggcgtggaattgcctgctgaatgatcgtcacggtttctttgaagaggagttagaagaattggaaagtagaaatgagaaattggcagtccgtgaacttggctttgtgtataaggaagaaagttttaagcgattgaagccacaacatgaatactgctttctacacaagtcgtttcaagagtatctggctgcgttatatattgcggataagttacgaagaaacgagtttaatgtattggagcatttaaactttcatgctgtggtaaataaatttcctcaggtgtttgtatttgtttgtggaatactgcgtgaggaggcaagtattctgtttgcacagattggtgagaagctaaagagtgactgggattggctcgaatgcagttgggcagcagcagttttcttttttgagagctgggttgaaagtggaaacgctgagggaatggcacatattctttgttcattcgtgccttttccacgggtaataaaatcatctttgagtcctataaaattggagaggactgaatggaacctgctcagagttttaatgttctgcagaggattttccaaggtagaggcaccccatgaaattcatctcagtcccccttcgtattgcccttcgatcattcctggaattgcagtgagagatttgacatctcttccaaatgtaaaatctctagattattccgattgttcttggactgttgaatcgacacatgaactttttcgcagtcttcccgatttcgcttctttaacggatttgggggtaccagatgtaccagaaatgactgatttggggatcgttgctgagggcttgacggctagcaagaccttagagagagtgagttgtactttgttgggagagaggggcgggggctggttcagggcccttgatgctggaatgtgcgctgatacaccactatcgtctgtccgtcttgcaatccgtggcccaatgaatgaaactgcgttacaagctttagagaatctcttgttaaacaaatcactgtcctctgtgtctgttattgtcgacggagatatgtcacaccctcttgctgtttccctgtcaagagctcttacaggccaaactgctgtcaagtccctggagttgcatgttattgggaagctgagtttctgttgtgctaatttgatagaacgaggtatcgtcaagaataactcactcagtaacttggtagtctctcttcgtagagagcttcccgataactggcaggggattgtggagaatctaaattttcgattggctgagaaaacaacagttacatttgaaatccacccaaacacttccagtaaagtcacggccactcagttgacaaattttcgtccttgtgtgacaaactgtgggttctttgaacaagaaagtgtcactctaaacctttggggtgagttaacggttgatggtgcaaaagctttatataacgtcttaccattcacctcggtacgccacctgacgttaaatatccatggaaaattaaccgatgactttcttcactgcacagcacgacatgttgataaacagaaatctttgtgccccataaccatcaacacttgggaccaattgagcaatgaggggaaagttcttttcaaagaacttgaattagacgagaatccagctcttaccctaaatgtgtgtgaggtgcaagtaccttcagatgaatcgggtgataacgaagttgagtctattgatgatcgtgaatctctcattgcgctatttaaggaagcgaaaaataccggaaaagaaaaccttacagttacaattaatgttcagagtgaggactctacgtctactggccgcagctggaacgagagtcttctccttggtttgccaagaaattgctcactaaattttcttactttaacgatcaataatttcagtccggggaccactgaatcgtcttttgttctaaattgttttttggaaagctgcatctcactgaagtcgctcaatgtgacattaaacgagtacaatgagaattgggaggatacctatgcatcccttctgcgcgagggcctgggacgcaacacctcactgatttctctaactttgacattcaacatctactctagagtacttaCGTACAATCGTTCCTTGTGGGTTTGGCAGtga

Transcript

amic_s0606.g1.t1

atgtcgtgaaagttatattgctaggatctttcaattactgtcttacttggacaccttcacagagacctctacagcaccagatcaagctgttgcagcagttaacttgggtgaacaaggacctagttcagtttcagaatcagtttcctatcctgatgcaacgacaatacatcacattgtgggtgatgcagtgagctcaggcagagaaaatgtcttcagcgataagtcagttgttgtgaaggtgctgaaagcagagtacaacagacgagctcaattgaggccacttttctgggacagcacgatacaattacctcttgaaaaggtctacacaagattgaaaattgtctcaagagggagaggaggtaatcaaggggaaaccgagcgctggagtgatgtaatctgggctgaggactccgggcgagatgagatttgggcgaaagcacgggctaataaggcgaaacggtgcggtatctttggtctgttaaaggaaaataaggacttcatgacaattgtggagggaagtccaggaattggtaaaacaactttctgtcttaaacttgcctatgactgggcaaatcaaagcagctctgcggcacattttccagagttcgaactagttttgctgttaaaatgtcgagatattgatggagatctaacggaagccatcacgaagcaactttttccaaaggatatcagcgaagatgccagggaagagctttttcgtttcttggaggatattgaaaatcaagagagagttttaattattttggacggcttggacgaactgccagaaaaatcgaagcattacgcggatgatcttctccacagagaaaggtgggctttctgttatgtgttagccactacgcgacaagaggaaggaattgaagtccgaaaacaccctgactttgtgtttgatttatttctacaaattgaagggttcactgaagaggactcgtttgagtacatcaggagacatttcaagaatgctggcctggagcactcatccaagggggagaagcttatagaagaaataaaaaaaaatgcactcctgcaagacctgcgaacaaatccattaaatttacttcttctttgcgttgtttatgaagatcatgaaggagaactgccatcatcccgaactgaactctaccatgtaattgtcgtgtgtcttttgagaagatattgtgcgaaacatgatgtgaaggctagtaaaacggacagggacttggagacacaatttaaaagggacatccgttgccttggagagctggcgtggaattgcctgctgaatgatcgtcacggtttctttgaagaggagttagaagaattggaaagtagaaatgagaaattggcagtccgtgaacttggctttgtgtataaggaagaaagttttaagcgattgaagccacaacatgaatactgctttctacacaagtcgtttcaagagtatctggctgcgttatatattgcggataagttacgaagaaacgagtttaatgtattggagcatttaaactttcatgctgtggtaaataaatttcctcaggtgtttgtatttgtttgtggaatactgcgtgaggaggcaagtattctgtttgcacagattggtgagaagctaaagagtgactgggattggctcgaatgcagttgggcagcagcagttttcttttttgagagctgggttgaaagtggaaacgctgagggaatggcacatattctttgttcattcgtgccttttccacgggtaataaaatcatctttgagtcctataaaattggagaggactgaatggaacctgctcagagttttaatgttctgcagaggattttccaaggtagaggcaccccatgaaattcatctcagtcccccttcgtattgcccttcgatcattcctggaattgcagtgagagatttgacatctcttccaaatgtaaaatctctagattattccgattgttcttggactgttgaatcgacacatgaactttttcgcagtcttcccgatttcgcttctttaacggatttgggggtaccagatgtaccagaaatgactgatttggggatcgttgctgagggcttgacggctagcaagaccttagagagagtgagttgtactttgttgggagagaggggcgggggctggttcagggcccttgatgctggaatgtgcgctgatacaccactatcgtctgtccgtcttgcaatccgtggcccaatgaatgaaactgcgttacaagctttagagaatctcttgttaaacaaatcactgtcctctgtgtctgttattgtcgacggagatatgtcacaccctcttgctgtttccctgtcaagagctcttacaggccaaactgctgtcaagtccctggagttgcatgttattgggaagctgagtttctgttgtgctaatttgatagaacgaggtatcgtcaagaataactcactcagtaacttggtagtctctcttcgtagagagcttcccgataactggcaggggattgtggagaatctaaattttcgattggctgagaaaacaacagttacatttgaaatccacccaaacacttccagtaaagtcacggccactcagttgacaaattttcgtccttgtgtgacaaactgtgggttctttgaacaagaaagtgtcactctaaacctttggggtgagttaacggttgatggtgcaaaagctttatataacgtcttaccattcacctcggtacgccacctgacgttaaatatccatggaaaattaaccgatgactttcttcactgcacagcacgacatgttgataaacagaaatctttgtgccccataaccatcaacacttgggaccaattgagcaatgaggggaaagttcttttcaaagaacttgaattagacgagaatccagctcttaccctaaatgtgtgtgaggtgcaagtaccttcagatgaatcgggtgataacgaagttgagtctattgatgatcgtgaatctctcattgcgctatttaaggaagcgaaaaataccggaaaagaaaaccttacagttacaattaatgttcagagtgaggactctacgtctactggccgcagctggaacgagagtcttctccttggtttgccaagaaattgctcactaaattttcttactttaacgatcaataatttcagtccggggaccactgaatcgtcttttgttctaaattgttttttggaaagctgcatctcactgaagtcgctcaatgtgacattaaacgagtacaatgagaattgggaggatacctatgcatcccttctgcgcgagggcctgggacgcaacacctcactgatttctctaactttgacattcaacatctactctagagtacttaCGTACAATCGTTCCTTGTGGGTTTGGCAGtgattttgttcccagcaactcaataaattattttactctga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46844	SLR5058 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12800	NLRP3, PYPAF1; NACHT, LRR and PYD domains-containing protein 3	-	Pattern recognition receptors	ko04054	deepkoala