Gene detail

Detailed information of amic_s0627.g4.t1 in Acropora microphthalma

Genomic Location: sc0000627_pilon:36521...41745
NR annotation: XP_029183533.2, uncharacterized protein LOC114951516 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0627.g4.t1

ATGGAAGATCGACTAAACTCTGCTCACTTCCTTATCTCATATGACCCTCCAGGTGATGGAAACTGCCAATTCTCATATATATGCGAGACATTAAGAAACATTGGACTGTACCGATCAGTTAAAACTTTAAGAGAGCAGATCGTGGAATATTTAAAGGACCATCCCCATATGCAAAACTTTATCACGGACGCATGGCCGACATATCTCCAAAATATGGCAAAAAACGGAACCTTCGGTTACCATCTTACCCTGCAAGCTGCAGCAGACCTCTTTAATGTGGAATTTAATGTCATCTCTTCCCTTGGACCTGCTGCAACAACAGTCATTTCGCCACAGAACTCAGTCCCTATTTCCAGCTTCTATATTGGCCATTTTGCAGAAGGAGATAGTGAGCACTATGTCGCCTTGCAAAACGATGCCATGTGGCAGGAACGTATGGAAGAAAGAGCGGCTGAATCAGACGAAGTACCAGAATCCGACAACAATGCGAACCAAGAGAAAAGCTCAGTGACAAGTGAGGTTGCTGCGGAAGAGAGCCACGTACAAGAAACTACTAATGAACATACTAGTGAGaaacattttaaccccgaagatattgaaatatTTCATGCAGAGAAAATGACCAAGAAGAAACCCCGATTTGGCGCTTTACCGCTTCTCAATATGCCTAGAAGAAGTCACGAATCTTCGAAGCCACCAGAACGACGATCTATCGTTAGAGATGTCAAACCGATCGCTCCTGTAAACACGAGTTGCTATCGGACTTTTGAAGAATTCTGTCACCGAGCCAAGAGCCTGAAATCTCTGAGTGAGTGGAGCTCCAAAGTATTGCCCGACAGATTTGTTTTCAAGAAAGTGGTGGAACCATATCTCCTACCAGAGTTGGAAATTGTCGTGGACGACAGTCTTGGATTCACTGTGAAAGTGTTTGGGTCATATTTGATCGAAGATCATCCACTGTACCTGAAATATCGTCGCTCAGTACAGAACGTAACTTTGTCGACTTTGATAAAGAACTTGGGGGATTACACAATGTGTTGTGGCGTTACTACTACTGAATTAACAAGCAAACTCTATCATCATGTCATTCCTATCAATCATGACTCGATGCAGGACAATGACGAGCAACAGTTTCCACACAAGGCATACTGGAGATCACGAAATTGTTCACTTCTTTTTGAACAAAATGGAACTAGCAATGTTTGCCATTTCTGCTCAGAATACGAATCTGCTGCCAACATTTCAAGAAAGGGAAAAGAGAATAAACTGTTGAAACCAGCACATATTAAGGCACCTATTTCTAAAACTGACCCTGAAAGAGTGAAGTTGACATTACAGGAACAAAGACTGAAATGTGCCCAACTTGAGAGAGAACTTCATGAAATGCGGACAGAATTACAAAAGTCCAACATTGAGATTGATCCCAAATTAAGTGACGACTTTAGCAAGATCCTTGATTCATCAAGTGCCAAAATTACTCCTTTCATGAGTCTATTTTGGCAACAGCAGCAGAAGCTATTCTCAAGGAGTGCAACAGGTGTGCGATACCACCCAATGATAATCAGATTCAACTTATCCCTAGTAGCCAAGTCCCCCTCATGTTATGAAGAATTGCATAATAGTGGAGTCTTGGTTTTACCAAGCCAGCGACGGCTTAAAGATTATCGGAATGCAATTAAACCCAAGAGAGGATTTCAAAAAGAAGTTATTGATGAATTGAATGCAGAAACAAATAACTATTTTGACGTTCAGAGCTATGTAGTCCTTCTTTTTGATGAAATGAAGGTATTAGCAAATCTTGTACTCGACAAGACAACAGGAGAACTTATTGGGTTCACAGATCTGGGTGACCCTGAAGTTAACTTCGCAGCCCTAGAGAAAGTTGACATGATTGCTACACATGCCCTAGCATTTATTGTTAGAGGAATTTGCACTGAGCTACAGTTTTGCCTGGCTTATTTTGCAACCACAGGAGTTACTGCTTCCCAGCTGATGCCCACCTTTTGGGAAGCAGTTTGCATTCTAGAAACAAGTTACAACCTGTGGGTGGTAGCAGCTACGGCTGATGGTGCCACACCAAATAGGAGGTTCTTCCGACTCCATAAGCCACTCGATGGGAATGCTGAAGGAGATGTGTGCTACCGCACCATAAACTTGTATGCACCTCATCGATACATTTACTTCTTTGCTGATGCACCACATCTAATCAAGACAACAAGGAACTGTCTAAGGAGCTCCGGCTCAGGAACCTGCACTAGCAGCACAAGTCTTGAGTGCATCGGTAGCATCTGTGTTGAAGGCATTTGGACCTCCAGAAGCTGCAGCTACTGCACAACTGTGCGAAATGGTGGACAAAGCTTTTGA

Transcript

amic_s0627.g4.t1

CAAGGAGAACAGGAAAAAAAAAGAATGTCAAAGGGACAGGCCCAAAAAGTGCTAAAGCAGCTCATCGCAAAAGCTATAAACTGCCATACCATAGTGAATGAGTCTTCATGGAAGATCGACTAAACTCTGCTCACTTCCTTATCTCATATGACCCTCCAGGTGATGGAAACTGCCAATTCTCATATATATGCGAGACATTAAGAAACATTGGACTGTACCGATCAGTTAAAACTTTAAGAGAGCAGATCGTGGAATATTTAAAGGACCATCCCCATATGCAAAACTTTATCACGGACGCATGGCCGACATATCTCCAAAATATGGCAAAAAACGGAACCTTCGGTTACCATCTTACCCTGCAAGCTGCAGCAGACCTCTTTAATGTGGAATTTAATGTCATCTCTTCCCTTGGACCTGCTGCAACAACAGTCATTTCGCCACAGAACTCAGTCCCTATTTCCAGCTTCTATATTGGCCATTTTGCAGAAGGAGATAGTGAGCACTATGTCGCCTTGCAAAACGATGCCATGTGGCAGGAACGTATGGAAGAAAGAGCGGCTGAATCAGACGAAGTACCAGAATCCGACAACAATGCGAACCAAGAGAAAAGCTCAGTGACAAGTGAGGTTGCTGCGGAAGAGAGCCACGTACAAGAAACTACTAATGAACATACTAGTGAGaaacattttaaccccgaagatattgaaatatTTCATGCAGAGAAAATGACCAAGAAGAAACCCCGATTTGGCGCTTTACCGCTTCTCAATATGCCTAGAAGAAGTCACGAATCTTCGAAGCCACCAGAACGACGATCTATCGTTAGAGATGTCAAACCGATCGCTCCTGTAAACACGAGTTGCTATCGGACTTTTGAAGAATTCTGTCACCGAGCCAAGAGCCTGAAATCTCTGAGTGAGTGGAGCTCCAAAGTATTGCCCGACAGATTTGTTTTCAAGAAAGTGGTGGAACCATATCTCCTACCAGAGTTGGAAATTGTCGTGGACGACAGTCTTGGATTCACTGTGAAAGTGTTTGGGTCATATTTGATCGAAGATCATCCACTGTACCTGAAATATCGTCGCTCAGTACAGAACGTAACTTTGTCGACTTTGATAAAGAACTTGGGGGATTACACAATGTGTTGTGGCGTTACTACTACTGAATTAACAAGCAAACTCTATCATCATGTCATTCCTATCAATCATGACTCGATGCAGGACAATGACGAGCAACAGTTTCCACACAAGGCATACTGGAGATCACGAAATTGTTCACTTCTTTTTGAACAAAATGGAACTAGCAATGTTTGCCATTTCTGCTCAGAATACGAATCTGCTGCCAACATTTCAAGAAAGGGAAAAGAGAATAAACTGTTGAAACCAGCACATATTAAGGCACCTATTTCTAAAACTGACCCTGAAAGAGTGAAGTTGACATTACAGGAACAAAGACTGAAATGTGCCCAACTTGAGAGAGAACTTCATGAAATGCGGACAGAATTACAAAAGTCCAACATTGAGATTGATCCCAAATTAAGTGACGACTTTAGCAAGATCCTTGATTCATCAAGTGCCAAAATTACTCCTTTCATGAGTCTATTTTGGCAACAGCAGCAGAAGCTATTCTCAAGGAGTGCAACAGGTGTGCGATACCACCCAATGATAATCAGATTCAACTTATCCCTAGTAGCCAAGTCCCCCTCATGTTATGAAGAATTGCATAATAGTGGAGTCTTGGTTTTACCAAGCCAGCGACGGCTTAAAGATTATCGGAATGCAATTAAACCCAAGAGAGGATTTCAAAAAGAAGTTATTGATGAATTGAATGCAGAAACAAATAACTATTTTGACGTTCAGAGCTATGTAGTCCTTCTTTTTGATGAAATGAAGGTATTAGCAAATCTTGTACTCGACAAGACAACAGGAGAACTTATTGGGTTCACAGATCTGGGTGACCCTGAAGTTAACTTCGCAGCCCTAGAGAAAGTTGACATGATTGCTACACATGCCCTAGCATTTATTGTTAGAGGAATTTGCACTGAGCTACAGTTTTGCCTGGCTTATTTTGCAACCACAGGAGTTACTGCTTCCCAGCTGATGCCCACCTTTTGGGAAGCAGTTTGCATTCTAGAAACAAGTTACAACCTGTGGGTGGTAGCAGCTACGGCTGATGGTGCCACACCAAATAGGAGGTTCTTCCGACTCCATAAGCCACTCGATGGGAATGCTGAAGGAGATGTGTGCTACCGCACCATAAACTTGTATGCACCTCATCGATACATTTACTTCTTTGCTGATGCACCACATCTAATCAAGACAACAAGGAACTGTCTAAGGAGCTCCGGCTCAGGAACCTGCACTAGCAGCACAAGTCTTGAGTGCATCGGTAGCATCTGTGTTGAAGGCATTTGGACCTCCAGAAGCTGCAGCTACTGCACAACTGTGCGAAATGGTGGACAAAGCTTTTGACTGCCTGAATGTCTGTAGCACACAAGAACATCAGAGAAAGCGGAAGCCATTTCTGGCTCCCTACACATCTGTTAATGATCAAAGGTTCCAGTTCTTAATATACTTTTTGGACTATTTGAATCACTGGAAAGAAAGTACAGAGACAAGACAAGGAAACTTCACACAAAATGCCAGAGCACGCATGTTTCTATCGTGGCAAACATATGAGGGCTACAAAATAACAGTCCATTCTGTTATTGAGGCAATAAAATTCCTTTTGCAAGAAGGAATGGAGTTTGTTTTGACTGAGCGCTTCTGTCAAGATCCTGTAGAGGAATACTTTGGTAAACAACGCAAAATAGGACGACGCAGTGAAAACCCAGACATTCGTATGTTTGGGTACAACAACAACACAATCAGAATTCAGAGGTCTGTGTCCTGCCAGAGTGGCAACACCAGAGGAAGAAAGGACAAGCGGAAAGCATGGCAAGAAGTTTCTGATGATAAACTACAATGCAGAAAAGTCAAACGCTCCAAGTGAAACTAATGATGAAAAACATTCAAAAGTGGTTTTATTATTTTATATGAAAACATTTTACATTTGTAGATATTGATCATAATTAGTAAGCTTATGATACTGTTATGCTAGTATAATGCAACAGAAACTGTCTTATTATTTTAATAAATGTAATTTTGTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8LBW2	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 9 OS=Arabidopsis thaliana OX=3702 GN=OTU9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000051 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21787 all species →	TNP-like_RNaseH_N	TNP-like, RNase H N-terminal domain	Domain	Interproscan
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050704 all species →	Family	OTU domain-containing ubiquitin thioesterase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR048365 all species →	Domain	Transposable element P transposase-like, RNase H domain, N-terminal	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419 all species →	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0627.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.