Gene detail

Detailed information of amic_s0642.g2.t1 in Acropora microphthalma

Genomic Location: sc0000642_pilon:5476...14837
NR annotation: XP_044183255.1, netrin receptor UNC5B-b-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0642.g2.t1

CTACAGGGCACCTTTTCTCCCAGGCAGAACGCGGAACCTGGCGTCCTCGATGTCCTCAGTCAAGAAATTGCTGCGTAAGTGCGTCTGTATCAAGTATTACAGCACGGAATGAAAATCAGATTGAGGTACAAGGTATACGTGCATTGAACAGCTTTGACTCAGACGACTCTCCTCCAAGCTCTACCCAAGTGACGGTAACTAGCTATCTCTCAGAAGAAGTCAAGCCCGTTTACCACATCTTTCCAGAAGACCAGAGGATCCGGTCAGAGCCCCTGTTTGTCACGAGTGCACATGACATCTTTGACAATAATGGGGGAACATTAACCCACCCGGATTCCGATGTCTGCATTAACATCGAGCCTGGGACATTCCCCGACGGAAAACAACAGTCTATCTTTTTCCACGTGATTTACAATGACACACATCAATCCCCAGAAAGCAGTGGAGATTGTGCTTCCTCATTGCCTCTACGTGGACGAAGTGAAAAAAGGATCTATTGAAGTGTACAGATGTGGGCAATATACTAGCGAAGGCGCCCAAAAGTGGGAGAAAATCCCATCGGAAAGATCCTGTCACTCGAAGGTTTGGTTTTCCGTCAAAAAGGACAGCATCGTCATCAAAACGAAAATTTTTTCCATTTGGAGCGTTTTTGTTTGCGGTGTCGGTGGATCGAAGAGAAAGAGAATAACCGCGTTCGCTAGCAAACCGAATCCAGCAAGCAATCTCATTTCCCTTCGCTGCTACATCTACAGTGACAATGAAGATTCCAAGAGGAAAGTTGAGCGGCTTGAGAAGGAGCGCTTTCCTGGGACTAAACCAGCAGCTGGTGAAAAACCTTTCAAACTTTTCAGCGACGATCAAGACGTCAAAGTGTGGCTTGATGAAGACGCTTTGACAAGGGAAGGATGGATGCTTGATGCGGGAATTCGCGCCTCACAAATCTACAGGTATGAGATGGCATACAGCAATGGATTCAGGTCCAAATATGCTTGTGCATTCCCTGTAAAGCCAATTGCAGATTGTTTCTGTGGAGTTAAGGACTTCTCCTGCGCGCTGTACTTTCAACAGATTGGCCATGCAGAGGACTTCATTTATGTCAACCCAGGGATTCCACTTCTGCCACTCCAGGCAACCTTAGATGTCAGTGGATCCAACAGCTACGAAGCCCAAAGTCAAAACCTTTCCAGTCAAGCTTCAAACCCAGTTATTTCGTCGGAATATGAAATACCAGAAGATTTGCGCAAACGGTACGACGAGCCTGTTACACAAGAAGACTGTGTTTGTATATGCTATCACATTGTCAATTGGAAAATGTTCCTGCAACATTTGAAAGTATCAGAGGTGTTTGTCAAAAATTTAGATGAAGATCACAGATGCGTAGAGGAAAAATGTTATCGAGGCCTTTTAAAATGGACAAGATCAGCTGGGGCCCAAGGAGCCACCATGAGAAATCTGTGTATTGCCCTGATAGCTGCAGGTTGCACAGAAGCGATTGAAAAACTTTCAAGCAGAGACTCTTATTCTCCAGGCTTTGTTGTACCAGAAGAATTGCGCATGCGTCTCCATCGCGACGACCCCGTTACTCGACAGGACTGTATTCGTCTATGCGATCATATTGTGAATGATTGGAAAATGATTCTTCGACATCTGGGCGTTGAAGAGGCCGTTCTTGAAAATGTAGATGCGAATCACCAAAGAGCAAACGAAAAAAGTTATCAAGGCCTTTTGGAATGGACAAGATTAGCAGGGACCCAAGGAGCTACACTAAGAAAGCTGTGCAACGCCTTGAGGGCTGTTAATTGCACAGAAGCGATTGAAAAATTGTCGAGCAGAGATGATGGCGCGAGACTGCCTACGCATGCTATCCCAGAAACTGTTTGAGCCGATTCTCTCACGTGTTACTTGACCGCAACTCGCATTTTTAACGAAACCATACTCGTACCACTTACGTCCAGAAACCCAACGCGGCCGTCTTGACGTCTTGTTAAAACACAATTCAGTTTCGTAAAATTCTATGCCTACGCATGCTGACGTGTAAATATGTGTATAGGAAAAAAAAAAACATAGATCTTTATTGCGTAGATGGAAATTAATTTTCATCTCGTGTAATCTGATAATTCAAAACTACTGTTTTTAAAGATTTAGCTTCAATTTCTCATTTTCGTCGGCTCATACCGATAGCGAAGAATCTTTTGGAAACAACTGTCAGCTACGAGAAGTAACCACCAAATGTGTGGAACTTGATTACTGTTGAATTCAATTTATAGCAAAAGTTCATCATATAATTGTCAGCAAAATGACCACAAAATAAAAAAGAAAACAAGTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001790 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488 all species →	Domain	Death domain	Interproscan
IPR052493 all species →	Family	Tumor necrosis factor receptor superfamily member 1A	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46861 all species →	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 1A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005031 all species →	Molecular Function	tumor necrosis factor receptor activity	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0043120 all species →	Molecular Function	tumor necrosis factor binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0045121 all species →	Cellular Component	membrane raft	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0642.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.