Gene detail

Detailed information of amic_s0662.g2.t1 in Acropora microphthalma

Genomic Location: sc0000662_pilon:19582...39411
NR annotation: XP_044172250.1, uncharacterized protein LOC114972529 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0662.g2.t1

ATGCGACCATTAGGCAGCAGTCTTTTGGCAGAGGGAACATCAAGTGATGAACATACCATGCTTGAGCTTGGGGGGGCATTTTCTGAACAGCGTTGTGTTCACGAAAGCCAAACTAATGACAAGAAGAAATCTTTGGCAGCACATGGAAACAAACAGTATGTAAAAGAAGTTGGAGGAGATCTTATCAAATGTATTATCGGTATATTGATGCTAGAGAAGGAAAAACAAAAAGTTATCTTTGAAATGTTTAATCAGCAAGTTCAAACTTATGCAGAATTTCAAGATGATTCCTCAGATAAACTACAAGGAGTGGGGAGATTGATAGCAGCCATGGTAGCAAGTTATAGGCTACTGTTTATGGGtgctgagaagggctctctgatcatcattttcaattgccagtcaattgaacatcttgagcatctgtggaatgactattgctctggtcgcctcgatgaaatggcagagcagtaccttgtaacagatgaagtgaaagagaagctgaacctggagacaattaaggtgaagacaaccatagaagagaaaaactatttgaactgcaggaaagttctcgtggagcGTTCAGggacctctgctgctcaacctatagtaccagaagactcagtttgcccactggatccaacaacagtgcagcagcagtttaaagaaggtgaaactaccataggcaacaaaagtccaaagaagttgggcaaaagaggaatttcagaatcctctgctGAGCATGACATCGATACACATGAAATTGCCAAAGTACAAAGATTAGAAGAACAGTTACACAGAGTCACACCAGAAGCATTTTATGAACCTTGTTCAGTGCTTAAATTGGAAATAAAAGAAGAGGAGGAAGTTTTGGCAACATCTGAAGATGAGCAGCACTTGAGAGATTTTGGAGagacttcctcttctaaaatcacagctgctgatgactggttagaacaaagtcctcttgcaatccccaaagcagttggccaattccatccaacaccattaagtcagcacattgaggaaggttcagtgtctgtaggatcaaaaaatgcagagaagttggggaaaagaagattttcagaatccagtgctgggcatgGGACAGACATAAGTGGAATTGCCAAAATGCTTAGATCAGAGGAACAGTTACCTTCAGTTTTCTCCGAGATATTTTATGAACCTCATTTCCCAATGCACAAGAGTAAAAGTAATGAAGAGAGTAAAGCTTTGGCAATACCTGGCAACAGTACATCGGGAGGGTTTGGAGgagaaggtgacggaactccatcatttactcaacaaagtgttcttgatcagggaactagcataattgagatggccacagctgcaggccatgaggaagtaccggttaagcaagaagacacagactggatgattagaaaggaaaaggccataGCATCAAGAAGTGCTCTTCACAAGGCCTCAGTCAATGGACAATATGAGGAAGTCCAAAAGTATCTTTCCAGTGGATGTGCGGTTGACGTTAAAGATCAGTTTTCGCTGACACCATTGCACCTGGCTTGTTGGTATGGACAGGAAGCTATTGTAAAGCTCTTGTTAGAGCATGGTGCAGATGTTAATGCCACAGATAGGAAAACATTTgaaatgtacacagagttcgttgggactgagaaaacacttagtaagctgcactcatgcgccaagaggaatgacgtggaaatggcaattgaactcgttttaaatgatagcatcgatgtcaatgtcgctgcaacgagaaacatcacacccttgctttgggcgagtaccgccgcctcaagtttgtcaatcaaaactctgattgatcttggtgcagatgtaaatgctcgaacattccaggagagtacttttggcttcagcagtgataccgcacttcgttctgcaatccatggcaacaatgcaaatgtcgttaaagtgttacttaccaacaaggcggatgccaatattgctgacttacaaggaaatacgcttctacattcatctacttccaagggatttttcagcatttcccagctgctgatagactctggctgcagaatgaatgtgagaaacagggtcggggaaacgcttcttcattctagtgttcgtggtaagagtgtagctgatgttaagcttttacttagcaacaacgccgatgccaacattcaggacagttgtggaaatacccctcttcacatttctacgcgtgagggcttgtgcggcatttcacagttgttggtagactctggctgcaaaatcaatgtgagagacaatgacggggaaacgcctcttcattctactgttcgtgataagaatgtagctgatgttaagcttttacttttgaacaacgccgacgcgaatattcaggacgattggggaagtacccctcttcatacatctacgcgtgagggattgtgcgacatttcacagttgttggtagactctggctgccaaatcaatgtgagaaactacgacggggaaacgcctcttcattctgctgttcgtggtaagaatgtatgtgatgttaaagttttacttagcaacaacgccgatgcgaatattgaggacaatcagagaaatacccctcttcatatatctacgcgtgagggattgtgcgacatttcacagttgttggtagactctggctgcaaaatcaatgtgagaaactacgacggggaaacgcctcttcattcttctcttcgtgatgagaatgtagttgatgttaagcttttacttagaaacaacgccgatgcgaatattcgggacaatcagggaaatacccctgttcatgtatcaacgcgtgagggattgtgcgacatttcacagttgttggtagactctggctgcaaaatcaatgtgagaaactacgaaggggaaacgcctcttCattctgctcttcgtggtaagaatgtagctgatgttcagcttttacttaggaacaacgccgatgcgaatgttcaggacaatcagggaaatacccctcttcatatatctacgcgtgagggattgtgcgacatttcacagttgttggtagactctggaagcaaaatcaatgtgagaaacaacggcggggaaacacctcttaattctactgttcgtggtaagaatgttggtgatgttaagcttttacttagcaacaacgccgatgcgaatattgaggattatcagggaaattccccacttcatatatctacgcgtaaggcattgtgcgacatttcacagttgttggtagactctggctgcaaaatcaatgtgagaaacaacgacggggaaacgcctcttcattctagtgttcgtggtaaaaatgtagctgatgttaagcttttacttaaaaacaacgccgatgcgaatattaaggactatcaaggaaataccccgcttcatatatctacgcgtaagggattctgcaacatttcaaatttgctagtagactctggctgcaaagtcaatgtgagaaacaacgacgggggaacgcctcttcattctagtgttcgtggtaaaaatgtagctgatgttaagcttttacttaaaaacaacgccgatgcgaatattaaggactatcaaggaaataccccgcttcatatatctacgcgtaagggattgagcgacattttaaagttgctgatagactccggcagcaacaaaaacctgacaaacCGGGAAGGTAAAACGCCACTCGATCTTAAACCTTTCTTTCGTTATCCTCCTTATGCTGGTGATTCAGAGGAAGCTAAAGGAAATGAAGGACATGCATATGCACCGCAGAAGTGTTTCCGAAATAGAAGTTTCTTTGGAAGTGAACCTAAAGGTGATCCGTGGATGAACCAACCGACTCAGTCTAATCTGCCTTCACCTCTCCTTGGCAAAGTAAGGAGTGGTTCACCGTTAAAGAATCGACCCGAATTATCATCGGCTCTAAGTAAGCGCCGGATGGGTTATGTCTCACCTCCAACTCTTTATGGTGATTTAGAGGAAGATAAACGAAATACAGGGTATGCATCGCAGAAGAGTTTCCGACATAAAACTGTTGCTGAAAGTGAACATGAAGATGATGCGTTGATTAACCCAGAGACTGTATCTTCACCTATCGTTGGCAAAGGAAAAGAGCAAAGCTCGACGTAA

Transcript

amic_s0662.g2.t1

GATCAAATTTGCAAGAAAGTAAAGGTGAATAACCTTGTTATAAGTTAGGCACCCATTTGGGCTACTCATTCAAAAATTTGGTCACCTGCACCCACAAATAAGTCACCCTAGGGAACCATGCGACCATTAGGCAGCAGTCTTTTGGCAGAGGGAACATCAAGTGATGAACATACCATGCTTGAGCTTGGGGGGGCATTTTCTGAACAGCGTTGTGTTCACGAAAGCCAAACTAATGACAAGAAGAAATCTTTGGCAGCACATGGAAACAAACAGTATGTAAAAGAAGTTGGAGGAGATCTTATCAAATGTATTATCGGTATATTGATGCTAGAGAAGGAAAAACAAAAAGTTATCTTTGAAATGTTTAATCAGCAAGTTCAAACTTATGCAGAATTTCAAGATGATTCCTCAGATAAACTACAAGGAGTGGGGAGATTGATAGCAGCCATGGTAGCAAGTTATAGGCTACTGTTTATGGGtgctgagaagggctctctgatcatcattttcaattgccagtcaattgaacatcttgagcatctgtggaatgactattgctctggtcgcctcgatgaaatggcagagcagtaccttgtaacagatgaagtgaaagagaagctgaacctggagacaattaaggtgaagacaaccatagaagagaaaaactatttgaactgcaggaaagttctcgtggagcGTTCAGggacctctgctgctcaacctatagtaccagaagactcagtttgcccactggatccaacaacagtgcagcagcagtttaaagaaggtgaaactaccataggcaacaaaagtccaaagaagttgggcaaaagaggaatttcagaatcctctgctGAGCATGACATCGATACACATGAAATTGCCAAAGTACAAAGATTAGAAGAACAGTTACACAGAGTCACACCAGAAGCATTTTATGAACCTTGTTCAGTGCTTAAATTGGAAATAAAAGAAGAGGAGGAAGTTTTGGCAACATCTGAAGATGAGCAGCACTTGAGAGATTTTGGAGagacttcctcttctaaaatcacagctgctgatgactggttagaacaaagtcctcttgcaatccccaaagcagttggccaattccatccaacaccattaagtcagcacattgaggaaggttcagtgtctgtaggatcaaaaaatgcagagaagttggggaaaagaagattttcagaatccagtgctgggcatgGGACAGACATAAGTGGAATTGCCAAAATGCTTAGATCAGAGGAACAGTTACCTTCAGTTTTCTCCGAGATATTTTATGAACCTCATTTCCCAATGCACAAGAGTAAAAGTAATGAAGAGAGTAAAGCTTTGGCAATACCTGGCAACAGTACATCGGGAGGGTTTGGAGgagaaggtgacggaactccatcatttactcaacaaagtgttcttgatcagggaactagcataattgagatggccacagctgcaggccatgaggaagtaccggttaagcaagaagacacagactggatgattagaaaggaaaaggccataGCATCAAGAAGTGCTCTTCACAAGGCCTCAGTCAATGGACAATATGAGGAAGTCCAAAAGTATCTTTCCAGTGGATGTGCGGTTGACGTTAAAGATCAGTTTTCGCTGACACCATTGCACCTGGCTTGTTGGTATGGACAGGAAGCTATTGTAAAGCTCTTGTTAGAGCATGGTGCAGATGTTAATGCCACAGATAGGAAAACATTTgaaatgtacacagagttcgttgggactgagaaaacacttagtaagctgcactcatgcgccaagaggaatgacgtggaaatggcaattgaactcgttttaaatgatagcatcgatgtcaatgtcgctgcaacgagaaacatcacacccttgctttgggcgagtaccgccgcctcaagtttgtcaatcaaaactctgattgatcttggtgcagatgtaaatgctcgaacattccaggagagtacttttggcttcagcagtgataccgcacttcgttctgcaatccatggcaacaatgcaaatgtcgttaaagtgttacttaccaacaaggcggatgccaatattgctgacttacaaggaaatacgcttctacattcatctacttccaagggatttttcagcatttcccagctgctgatagactctggctgcagaatgaatgtgagaaacagggtcggggaaacgcttcttcattctagtgttcgtggtaagagtgtagctgatgttaagcttttacttagcaacaacgccgatgccaacattcaggacagttgtggaaatacccctcttcacatttctacgcgtgagggcttgtgcggcatttcacagttgttggtagactctggctgcaaaatcaatgtgagagacaatgacggggaaacgcctcttcattctactgttcgtgataagaatgtagctgatgttaagcttttacttttgaacaacgccgacgcgaatattcaggacgattggggaagtacccctcttcatacatctacgcgtgagggattgtgcgacatttcacagttgttggtagactctggctgccaaatcaatgtgagaaactacgacggggaaacgcctcttcattctgctgttcgtggtaagaatgtatgtgatgttaaagttttacttagcaacaacgccgatgcgaatattgaggacaatcagagaaatacccctcttcatatatctacgcgtgagggattgtgcgacatttcacagttgttggtagactctggctgcaaaatcaatgtgagaaactacgacggggaaacgcctcttcattcttctcttcgtgatgagaatgtagttgatgttaagcttttacttagaaacaacgccgatgcgaatattcgggacaatcagggaaatacccctgttcatgtatcaacgcgtgagggattgtgcgacatttcacagttgttggtagactctggctgcaaaatcaatgtgagaaactacgaaggggaaacgcctcttCattctgctcttcgtggtaagaatgtagctgatgttcagcttttacttaggaacaacgccgatgcgaatgttcaggacaatcagggaaatacccctcttcatatatctacgcgtgagggattgtgcgacatttcacagttgttggtagactctggaagcaaaatcaatgtgagaaacaacggcggggaaacacctcttaattctactgttcgtggtaagaatgttggtgatgttaagcttttacttagcaacaacgccgatgcgaatattgaggattatcagggaaattccccacttcatatatctacgcgtaaggcattgtgcgacatttcacagttgttggtagactctggctgcaaaatcaatgtgagaaacaacgacggggaaacgcctcttcattctagtgttcgtggtaaaaatgtagctgatgttaagcttttacttaaaaacaacgccgatgcgaatattaaggactatcaaggaaataccccgcttcatatatctacgcgtaagggattctgcaacatttcaaatttgctagtagactctggctgcaaagtcaatgtgagaaacaacgacgggggaacgcctcttcattctagtgttcgtggtaaaaatgtagctgatgttaagcttttacttaaaaacaacgccgatgcgaatattaaggactatcaaggaaataccccgcttcatatatctacgcgtaagggattgagcgacattttaaagttgctgatagactccggcagcaacaaaaacctgacaaacCGGGAAGGTAAAACGCCACTCGATCTTAAACCTTTCTTTCGTTATCCTCCTTATGCTGGTGATTCAGAGGAAGCTAAAGGAAATGAAGGACATGCATATGCACCGCAGAAGTGTTTCCGAAATAGAAGTTTCTTTGGAAGTGAACCTAAAGGTGATCCGTGGATGAACCAACCGACTCAGTCTAATCTGCCTTCACCTCTCCTTGGCAAAGTAAGGAGTGGTTCACCGTTAAAGAATCGACCCGAATTATCATCGGCTCTAAGTAAGCGCCGGATGGGTTATGTCTCACCTCCAACTCTTTATGGTGATTTAGAGGAAGATAAACGAAATACAGGGTATGCATCGCAGAAGAGTTTCCGACATAAAACTGTTGCTGAAAGTGAACATGAAGATGATGCGTTGATTAACCCAGAGACTGTATCTTCACCTATCGTTGGCAAAGGAAAAGAGCAAAGCTCGACGTAATGGAGTGGTGTCCTGTTAAAGGAAAGAAAAAGCGACAGGAATTAGAAACGACAAAaggcaccgtggccgagtggttaggtcgctggacttgaaatctggtgatccagctagtggtcagagcgggaccttcatctcgggatcaacagatttcaagtcccgctctgaccatttgctggattttagccaggtagtccctggttcaactcctcggctgcacttgtatatagatttctagtttctaaagaagctgtggtactgcgtcgtttcatctgctgaatttctggcccacaatgtgaactgctgggtttaccagtaattgtgttagccaggatATATTTATATGTATTGTGAGTGTTTATGTAGGGGGTTGAGGAACTGTGCTAATAGTGGAAAAGTGGTGTTTTGGACCACATTTAGTAGTGGCTATGTTTGAACTTATGCATGTATCTATTAGTCAAAGCGTTTCATTGATTCCGTAAGGGTCAACGTTCAATCATTTGTAAGCAAACTAAATTAGACGTTTCTGGTGCGAACTGAAGATTGTTCATTTTTGTCAGCCACATGCAGCTGTGGCGCATGAGACGCAGAGCAAAGTACGTAGTGGAAAGCATCTCGAAGTGTTTTATGTGTTCTTCACCTTCAGCCGCTCGAGAAAAGTGTATTTGTTCTAATAAAACCCCTGGGGATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q25338	Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus OX=6925 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0014143 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR051070 all species →	Family	NF-kappa-B Inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46680 all species →	NF-KAPPA-B INHIBITOR ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007253 all species →	Biological Process	cytoplasmic sequestering of NF-kappaB	Interproscan
GO:0051059 all species →	Molecular Function	NF-kappaB binding	Interproscan
GO:0071356 all species →	Biological Process	cellular response to tumor necrosis factor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15502	ANKRD28; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.