Gene detail

Detailed information of amic_s0729.g1.t1 in Acropora microphthalma

Genomic Location: sc0000729_pilon:1...28925
NR annotation: PFX21307.1, Transposable element P transposase [Stylophora pistillata]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0729.g1.t1

ATGATCAAAAAGAAGCCAAAATTCGGTGCCATACCAAAGCTTCACATGCCTCAAAAAAGCCATGAAAGCACCAAGCCGCCTCCGAGACCCGCTCAAACAGTAGTGAAAGATCTGGACACCGAGGAACAGCCATCCGCTTGTTACAGGGATTTTCCTGAGTTTTGCAGGAGAATGAAAGTATTGAAGTCACTGGATGAATGGGAGATCAAGAACCTATCAGACAGAGTTGTATTGAAGAAAAATGAGGTCCCTTTCCTACTCCCCAAAATAGAAATTATCGTTGATGACAGCCTTGGCTTCACAGTGAAAGTGTTTGGTTGCTATTTGCCAGAAGACCATTCTGTGTATGTTGAGTATAGACGTACAGTGAGAAATGTGGCCATATGGAAACTTGTGAAACAGGTTGAAGAATACAAGCTTTGTAGTGGTGTGACAACTTTCGAGCTAACAAGCAAGTTGTTCCATCATGTGATACCAATTAATGAAGATTCATTGGAGGATGGAGATCAGAACCAGCCATTTCCAAACAAAGGCTTCTGGAGAACAATGGGCTGCTCCCTAATTTGTGAAGAGGGAGAATCTGCTTGTGTTGCTTGTACAGAGTATATGGCTTATGTAAACAATACCAAGAGGGCCAAAGAGAGGCGTTTATTAAAACCTGCACATGCCAAGGCACCTGTTTCCAAGACTAATCCAGGAAGGATAAAGCTCACCTTACAAAGTCAACGACTGCGATGTGCACAGCTAGAACAAGAACTTAATGAAATGAGAACTGAACTGATCAAGTCAAATGTGGAAGTGGATCATGATTTGAGCAATGATTTATGTAGTATTCTTCAAGCTGCTGATGATAATGAAGTCACTCCTTTTATGAAGTTGTTCTGGGAACAACAAAAGAAACTACATGCAAGTAGTCGTAGTGGGGTACGTTACCACCCCATGATCATTAGGTTCTGTTTGTCTCTTCATGCTAAGTCACCGTCATGTTATGAGGAGTTGCGAAATAGTAAGGTTTTGGTTCTTCCCAGTCAACGTCGGCTGAGGGATTACAGGAATGCAATCAGACCCCAAGCAGGCTTTCAAGAGGCAGTGGTGGACGAATTAAATGAACAAACTAACTCATACTTTGATGTACAAAGATATGTAGTTCTTCTTTTTGATGAAATGAGAGTGATGTCAAATCTTGTCTTGGACAAAAATACTGGAGAACTTATTGGCTTTACAGATCTTGGGGATCCAAACTTAAACTATGGACTGCTAGAGAAAGCTGATGAGATTGCCACTCATGCTCTCGCATTCCTTGTGCGTGGAGTATGCACTGAACTGAAGTTCTGTTTGGCTTATTTTGCGACTACAGGTGTCACTGCTGCACAGCTCATACCTTTGTTCTGGGAAGCAGTTGGAATTCTTGAATCCAGCTGCAATTTGTGGGTCATTGCTACCACATCTGATGGGGCTTCACCAAACCGCCGCTTCTACAGGATGCATCACAGCATGGATGGAGATGCAGGCAAAAGTGTCTGCTATCGCACCATCAACATCTTTGCGCCCCATCGCTTCATTTATTTTTTTTCAGATGCTCCACATCTTGTGAAGACCACAAGAAACTGTTTATTTCACTCTGGAAATGGAACTTGTACACGGTATATGTGGAATGATGGATTATTTATCCTATGGCAGCACATCACTCAATTATTCCACCAGGACATTGACAATGGCTTAAAGTTACTTCCCAAGTTGACATATGAGCATATCAACCTCAACTCATATTCAATCATGAGGGTCAATCTTGCTGCTCAAGTCTTGAGTGCAACAGTTGCTGCTGTACTTCAGTCATTTGGCCCACCAGAAGCAGCAGCAACAGCAAAGTTTTGTAAGATGGTGGATGGTTTCTTTGACTGCCTCAATGTGCGGAGCACAAAAGAGCATGAGAGGAAGCGAAAGCCATTTCTTGCACCTTACACATCCCTCAATGATGAAAGGGCTACTGTTGTACTCTTGAGATCATCATCTGGAGATTGGTCTGTTGAAAATGTACAACTTGTCATTTTGGACCTTTCAAGCAGTGGATCATCACTCTGTGCTGATTTGGAAGAAGAATCAGTTCAATATGCTGATGAATTTGAGAGGCTACTAGATGTTGCCAATGCACCTGGTGAGGTTTTACAAAGGAAATACTTCTGCCATAGACATCTAAGATATGTATGGAATGAAGAGAAGGAGCGATTTGAGTTGTTAAGGGGCCTTGATGTTGGCACATACCCAGTGAGTTTTTATCTTGGTTCATCTGGTTTGCATCAGGAGGAGATTCAAAACAGATCGGCTGGTCGCATCATATTGAATGCCTTGGACATCATCACTGTAGCTGTTCCACCTGCGCTGCCTGGGGCAATGTCTGTTGGAACTGTTTATGCCCTCCAGAGGTTAAAGAAACAGCAAATCTATTGCATAAATCCTTCAAGAATCAATGTTTGTGGAAAGCTCAAGTTGTTCTGTTTTGACAAGGTTCCATATGAAATCGCCATTATTCGTCAGTTTCCATTTTCATCTGATCTTAAACGCATGTGTGTTGTAACCAGAACGTTAGCGGCCCCAAATATGGATGTGTACGCAAAGGGTGCCCCAGAAACCATTGCAAGTCTTTGTCAACCACAAACTG

Transcript

amic_s0729.g1.t1

CAAATTGACTCGATGGAGGCCAATTCCGTTGGCCTTTCGGTTGTAGTCGATCAACTGCACAGGCACCATGCATGGCTTTAATTGCTAAATGCATGAGATTGAGGTTATGGTAAAGAATATGCACTGTCATGTCATCAAAGATCAGTGCAAACATGCAGCGATGCTTAATTTTGGATGAGGATGGAGAGAATCTGCTTCGTTTAATTTTCTTCCACTCATTTTAAACCCCGTTTCCTCTAATTTTGACCTTTAGTTCATTCCACGAAAATGATCAAAAAGAAGCCAAAATTCGGTGCCATACCAAAGCTTCACATGCCTCAAAAAAGCCATGAAAGCACCAAGCCGCCTCCGAGACCCGCTCAAACAGTAGTGAAAGATCTGGACACCGAGGAACAGCCATCCGCTTGTTACAGGGATTTTCCTGAGTTTTGCAGGAGAATGAAAGTATTGAAGTCACTGGATGAATGGGAGATCAAGAACCTATCAGACAGAGTTGTATTGAAGAAAAATGAGGTCCCTTTCCTACTCCCCAAAATAGAAATTATCGTTGATGACAGCCTTGGCTTCACAGTGAAAGTGTTTGGTTGCTATTTGCCAGAAGACCATTCTGTGTATGTTGAGTATAGACGTACAGTGAGAAATGTGGCCATATGGAAACTTGTGAAACAGGTTGAAGAATACAAGCTTTGTAGTGGTGTGACAACTTTCGAGCTAACAAGCAAGTTGTTCCATCATGTGATACCAATTAATGAAGATTCATTGGAGGATGGAGATCAGAACCAGCCATTTCCAAACAAAGGCTTCTGGAGAACAATGGGCTGCTCCCTAATTTGTGAAGAGGGAGAATCTGCTTGTGTTGCTTGTACAGAGTATATGGCTTATGTAAACAATACCAAGAGGGCCAAAGAGAGGCGTTTATTAAAACCTGCACATGCCAAGGCACCTGTTTCCAAGACTAATCCAGGAAGGATAAAGCTCACCTTACAAAGTCAACGACTGCGATGTGCACAGCTAGAACAAGAACTTAATGAAATGAGAACTGAACTGATCAAGTCAAATGTGGAAGTGGATCATGATTTGAGCAATGATTTATGTAGTATTCTTCAAGCTGCTGATGATAATGAAGTCACTCCTTTTATGAAGTTGTTCTGGGAACAACAAAAGAAACTACATGCAAGTAGTCGTAGTGGGGTACGTTACCACCCCATGATCATTAGGTTCTGTTTGTCTCTTCATGCTAAGTCACCGTCATGTTATGAGGAGTTGCGAAATAGTAAGGTTTTGGTTCTTCCCAGTCAACGTCGGCTGAGGGATTACAGGAATGCAATCAGACCCCAAGCAGGCTTTCAAGAGGCAGTGGTGGACGAATTAAATGAACAAACTAACTCATACTTTGATGTACAAAGATATGTAGTTCTTCTTTTTGATGAAATGAGAGTGATGTCAAATCTTGTCTTGGACAAAAATACTGGAGAACTTATTGGCTTTACAGATCTTGGGGATCCAAACTTAAACTATGGACTGCTAGAGAAAGCTGATGAGATTGCCACTCATGCTCTCGCATTCCTTGTGCGTGGAGTATGCACTGAACTGAAGTTCTGTTTGGCTTATTTTGCGACTACAGGTGTCACTGCTGCACAGCTCATACCTTTGTTCTGGGAAGCAGTTGGAATTCTTGAATCCAGCTGCAATTTGTGGGTCATTGCTACCACATCTGATGGGGCTTCACCAAACCGCCGCTTCTACAGGATGCATCACAGCATGGATGGAGATGCAGGCAAAAGTGTCTGCTATCGCACCATCAACATCTTTGCGCCCCATCGCTTCATTTATTTTTTTTCAGATGCTCCACATCTTGTGAAGACCACAAGAAACTGTTTATTTCACTCTGGAAATGGAACTTGTACACGGTATATGTGGAATGATGGATTATTTATCCTATGGCAGCACATCACTCAATTATTCCACCAGGACATTGACAATGGCTTAAAGTTACTTCCCAAGTTGACATATGAGCATATCAACCTCAACTCATATTCAATCATGAGGGTCAATCTTGCTGCTCAAGTCTTGAGTGCAACAGTTGCTGCTGTACTTCAGTCATTTGGCCCACCAGAAGCAGCAGCAACAGCAAAGTTTTGTAAGATGGTGGATGGTTTCTTTGACTGCCTCAATGTGCGGAGCACAAAAGAGCATGAGAGGAAGCGAAAGCCATTTCTTGCACCTTACACATCCCTCAATGATGAAAGGGCTACTGTTGTACTCTTGAGATCATCATCTGGAGATTGGTCTGTTGAAAATGTACAACTTGTCATTTTGGACCTTTCAAGCAGTGGATCATCACTCTGTGCTGATTTGGAAGAAGAATCAGTTCAATATGCTGATGAATTTGAGAGGCTACTAGATGTTGCCAATGCACCTGGTGAGGTTTTACAAAGGAAATACTTCTGCCATAGACATCTAAGATATGTATGGAATGAAGAGAAGGAGCGATTTGAGTTGTTAAGGGGCCTTGATGTTGGCACATACCCAGTGAGTTTTTATCTTGGTTCATCTGGTTTGCATCAGGAGGAGATTCAAAACAGATCGGCTGGTCGCATCATATTGAATGCCTTGGACATCATCACTGTAGCTGTTCCACCTGCGCTGCCTGGGGCAATGTCTGTTGGAACTGTTTATGCCCTCCAGAGGTTAAAGAAACAGCAAATCTATTGCATAAATCCTTCAAGAATCAATGTTTGTGGAAAGCTCAAGTTGTTCTGTTTTGACAAGGTTCCATATGAAATCGCCATTATTCGTCAGTTTCCATTTTCATCTGATCTTAAACGCATGTGTGTTGTAACCAGAACGTTAGCGGCCCCAAATATGGATGTGTACGCAAAGGGTGCCCCAGAAACCATTGCAAGTCTTTGTCAACCACAAACTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4VNC1	Probable cation-transporting ATPase 13A4 OS=Homo sapiens OX=9606 GN=ATP13A4 PE=1 SV=3
Q5XF90	Probable cation-transporting ATPase 13A4 OS=Mus musculus OX=10090 GN=Atp13a4 PE=1 SV=1
Q5ZKB7	Probable cation-transporting ATPase 13A4 OS=Gallus gallus OX=9031 GN=ATP13A4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000051 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan
PF21788 all species →	TNP-like_GBD	TNP-like, GTP-binding insertion domain	Domain	Interproscan
PF21787 all species →	TNP-like_RNaseH_N	TNP-like, RNase H N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006544 all species →	Family	P-type ATPase, subfamily V	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR048366 all species →	Domain	Transposable element P transposase-like, GTP-binding insertion domain	Interproscan
IPR048365 all species →	Domain	Transposable element P transposase-like, RNase H domain, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45630 all species →	CATION-TRANSPORTING ATPASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140358 all species →	Molecular Function	P-type transmembrane transporter activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0729.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.