Detailed information of amic_s0776.g1.t1 in Acropora microphthalma

Genomic Location: sc0000776_pilon:5306...11557
NR annotation: XP_044174220.1, uncharacterized protein LOC122957849 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9ZVA0Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1
Q9FZ51Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 8 OS=Arabidopsis thaliana OX=3702 GN=LSH8 PE=1 SV=1
A2XED8Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000274 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04852
all species →		ALOG_domALOG domainDomainInterproscan
PF00589
all species →		Phage_integrasePhage integrase familyFamilyInterproscan
PF14529
all species →		Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002104
all species →		DomainIntegrase, catalytic domainInterproscan
IPR006936
all species →		DomainALOG domainInterproscan
IPR036691
all species →		Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR011010
all species →		Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan
IPR013762
all species →		Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR005135
all species →		DomainEndonuclease/exonuclease/phosphataseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46670
all species →		ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006310
all species →		Biological ProcessDNA recombinationInterproscan
GO:0015074
all species →		Biological ProcessDNA integrationInterproscan
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0776.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP