Gene detail

Detailed information of amic_s0818.g2.t1 in Acropora microphthalma

Genomic Location: sc0000818_pilon:13766...19342
NR annotation: XP_015779083.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like isoform X1 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0818.g2.t1

ATGAGGGTGTCGCCTTTTGACACAATCGGAGTCGACATGATAATAGagtgtctcgacaaactggcaaacttcgcaagaagacagctccagacaacagtcaaatgtccggtttgccaaacttcatttccaattcccgacacagacaccttcgccaatttgccttcttcttttcacctcaaccgactggtggatgttctcgctcttgaagaaagcggcgtacaggctcagaaatgcaatacttgccatgataccaacccggcaacaagctactgttttgtttgccagaccttcatgtgcgcttcttgttttcagtctcaccaacgtttcaaggtaacaagaggtcatcgcaatgttttgatcgacaaactacaagcccaggatgtacaagagttgattggaagacccgtgatgtgttcacagcaatttcacgaagatcaacctctggaattttactgtgaagattgcaaagttctgatttgccttaagtgcagtattgtgagtcataatcgacatcgcgtaacagacacgcaaaaagcttcactagaacaaaaaatgcaaataacggaggctgtggccaaattgaatgcggaaattcttttgtatgagaatgaaaccaagaaacaaactgagctaaaagataaaaacacgactaatattatgaacgcagaaaagaagatgacagactcggtggaagaatgcattcgcaatttgcgagaacacgagaagaaaatgaagcagaagtttcgtgagatttatcaagcggaacaaaaacaacacgcagcacgactggagaacttagagctgattaccacccaaatgaaaagctgcgtggaacgaggccagggggtattagaaagaaacatcagcgctgaaattctagaaacaaatcacaccattctccaacgctgtgatgaactgataaatgcaagaaaattagatcgttacaagtcgccatatttaaattacattgttaaaaagaaatatgatattttcgatcaaatttcactcaccaagactgattcctcgatgtgcttagctgaatttgatgacagcgaaatcggtagagagtccagttttgttgttgttacaagggattcagagggattgcaatgttatcaactagatgatcaaatcgaagtcgacattttaactgtagaaggtgatcacctgaaaacagacctggaagacagcaaggacggcaagtacacagtcacatacacaccacaatgtgttggacatcatagtgttgaaatccaagtaaatggacagccgctaactggcagtccctttgttgtgcagattcgtcagcatcactatcaattttcttttaagtttggattagaggggaatagagcaggagagccttggatttctgatattgctgtgagtgacagaactggaacgattgctgttgcagatgcaggtaataaaagaattcaactgttcagttcagaaggaaagtttcaagtgcaggtaaaacttgatggtgaaccttattctgtggcattcacagactgtggtaacctactgactttagtttctggggacaacaataagcttcgtctgttcagtgaggaaggtcagtttataaaacacatcaatgataagcatcttaagaaaccacaacttctttccattgcgagtgatggtcgtttaatcataacagatggggcaggcaacgaagtgaaggtcctttcccctgacgggagtgaccagctagtgtccatgactgccccaaactgtgataaatctccagaatgcactgcttatcatcagaagaagttctatgtttcttatcctgaatctcattgtatcaaggtatttgacgaaacaggagtgtacatatatgacataggctgtgagggatccagtgatggacagttttattatcctgttggactcgtcattgacaagtacaaccgactgatagtgtgtgatgtagataagttaaggctccaactcttcaccctgagtggcaagtttttgagtaaattagagggagagtggttctacgatagcccttggtgtgctgcgataaatctaaaatctaacactctctttgtgtcttctggatcacgcaatgacatcggtgtttttcattag

Transcript

amic_s0818.g2.t1

TCGCAAGTCAGCAAACTACAAATGTTAGGTACTTGTATCCTCAATTCCAAAGTTGAAATATCTCTTTCAGTACAGCATCTGACTTGAGCACCGTTTAATATAATTTTTGTTTCTTGTGCTGTGTGTAAAAGTCCTTTATAAAAATGAGGGTGTCGCCTTTTGACACAATCGGAGTCGACATGATAATAGagtgtctcgacaaactggcaaacttcgcaagaagacagctccagacaacagtcaaatgtccggtttgccaaacttcatttccaattcccgacacagacaccttcgccaatttgccttcttcttttcacctcaaccgactggtggatgttctcgctcttgaagaaagcggcgtacaggctcagaaatgcaatacttgccatgataccaacccggcaacaagctactgttttgtttgccagaccttcatgtgcgcttcttgttttcagtctcaccaacgtttcaaggtaacaagaggtcatcgcaatgttttgatcgacaaactacaagcccaggatgtacaagagttgattggaagacccgtgatgtgttcacagcaatttcacgaagatcaacctctggaattttactgtgaagattgcaaagttctgatttgccttaagtgcagtattgtgagtcataatcgacatcgcgtaacagacacgcaaaaagcttcactagaacaaaaaatgcaaataacggaggctgtggccaaattgaatgcggaaattcttttgtatgagaatgaaaccaagaaacaaactgagctaaaagataaaaacacgactaatattatgaacgcagaaaagaagatgacagactcggtggaagaatgcattcgcaatttgcgagaacacgagaagaaaatgaagcagaagtttcgtgagatttatcaagcggaacaaaaacaacacgcagcacgactggagaacttagagctgattaccacccaaatgaaaagctgcgtggaacgaggccagggggtattagaaagaaacatcagcgctgaaattctagaaacaaatcacaccattctccaacgctgtgatgaactgataaatgcaagaaaattagatcgttacaagtcgccatatttaaattacattgttaaaaagaaatatgatattttcgatcaaatttcactcaccaagactgattcctcgatgtgcttagctgaatttgatgacagcgaaatcggtagagagtccagttttgttgttgttacaagggattcagagggattgcaatgttatcaactagatgatcaaatcgaagtcgacattttaactgtagaaggtgatcacctgaaaacagacctggaagacagcaaggacggcaagtacacagtcacatacacaccacaatgtgttggacatcatagtgttgaaatccaagtaaatggacagccgctaactggcagtccctttgttgtgcagattcgtcagcatcactatcaattttcttttaagtttggattagaggggaatagagcaggagagccttggatttctgatattgctgtgagtgacagaactggaacgattgctgttgcagatgcaggtaataaaagaattcaactgttcagttcagaaggaaagtttcaagtgcaggtaaaacttgatggtgaaccttattctgtggcattcacagactgtggtaacctactgactttagtttctggggacaacaataagcttcgtctgttcagtgaggaaggtcagtttataaaacacatcaatgataagcatcttaagaaaccacaacttctttccattgcgagtgatggtcgtttaatcataacagatggggcaggcaacgaagtgaaggtcctttcccctgacgggagtgaccagctagtgtccatgactgccccaaactgtgataaatctccagaatgcactgcttatcatcagaagaagttctatgtttcttatcctgaatctcattgtatcaaggtatttgacgaaacaggagtgtacatatatgacataggctgtgagggatccagtgatggacagttttattatcctgttggactcgtcattgacaagtacaaccgactgatagtgtgtgatgtagataagttaaggctccaactcttcaccctgagtggcaagtttttgagtaaattagagggagagtggttctacgatagcccttggtgtgctgcgataaatctaaaatctaacactctctttgtgtcttctggatcacgcaatgacatcggtgtttttcattagaggtctttgaATACTTCAACAATAACAAACCTTGGTATGCTGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000293 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0818.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.