Detailed information of amic_s0867.g1.t1 in Acropora microphthalma

Genomic Location: sc0000867_pilon:757...9175
NR annotation: KXJ07305.1, Transposable element P transposase [Exaiptasia diaphana]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O70165Ficolin-1 OS=Mus musculus OX=10090 GN=Fcn1 PE=1 SV=1
Q9U8W7Techylectin-5B OS=Tachypleus tridentatus OX=6853 PE=1 SV=1
Q9WTS8Ficolin-1 OS=Rattus norvegicus OX=10116 GN=Fcn1 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000051 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21787
all species →		TNP-like_RNaseH_NTNP-like, RNase H N-terminal domainDomainInterproscan
PF00147
all species →		Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF21788
all species →		TNP-like_GBDTNP-like, GTP-binding insertion domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048365
all species →		DomainTransposable element P transposase-like, RNase H domain, N-terminalInterproscan
IPR020837
all species →		Conserved_siteFibrinogen, conserved siteInterproscan
IPR014716
all species →		Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR002181
all species →		DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR048366
all species →		DomainTransposable element P transposase-like, GTP-binding insertion domainInterproscan
IPR036056
all species →		Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR050373
all species →		FamilyFibrinogen C-terminal domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19143
all species →		FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0867.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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