Gene detail

Detailed information of amic_s0905.g3.t1 in Acropora microphthalma

Genomic Location: sc0000905_pilon:17797...21945
NR annotation: XP_029199865.1, ras-like protein RAS2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0905.g3.t1

agcatacatgcagttgaatcattgtgaaataatgcaaccattgcagaacaacacaacagatgaaactaaaCTTTGATAAAAGCAATAATTGTCTTGAACATCTTCACCGataataaagcaaaaagtagttatttgcaatcggcaacgctgtatttttggttaccttttttggctgatagacgtaCTATCTCGTTTTTGTGCTTGTTACCAGTTCTTCTTGTTCACTAAGAAATTTTGCTCATGGCCTCCATGAACTTGGTCACTCAGTATTAATTTTCTTCTCCCTTCAGAAATAAATGAAAGCAGTGTTACTTGACATGGATTATAAGTTACCCTATACACTTGTAAATTTGATAAATGCTGTTTAAAAACATTGTTTTTGCTGAACCATTGAATTCTTAAACCCCAATTAGTTATTAACCAATTTCGTTTTAATTAAGTTTTAAAATGTTGATAGTTAatatagtttggtacctgaagaaatcctttggtgacgaaacctaaagagttggttggcaattggtcactaaagaaaaaatttaACTTGGAGGGTCGCACTTGTGTTTTCTTGGAGTATGTGTGCATAAGGGCTGGTGTACAATAAGGAAATGCCAAAGTAACTCTACCACACTGCACACATCATTAGTGGTTAACCATCAGAACTCAGGTGGGAAGGGCCCTTAATATCATGGTGAATATTTGCTAATGCTATTTACTCCTTTTGTGGTTCCTTTTGTTTTTCAGTTTTCAAGAGATACAGACCACTTTTCACCCTCAGATTCTACGAGTTAAAGATAGGTCAGAGTTCCCTATGATTTTGGTTGGAAACAAATCTGATTTAGAGCAAGAGAGAACGGTGTCAACTTCTGAAGGTCAAGAACTTGCAAGTGGCTATAAGATTCAGTATATTGAAACCAGTGCTAAACAGAAAACAAATGTTGATCAAGCATTTCATGACCTTGTAAGAGCCATCAGGAAATTCCACGCTCAACTGGAAGAACAGCAAAGAAAGAGAGGAAATTCTGGCAAGAAATCCAAGTGCTTAATTTTGTGACAGTCGAACCCCACCCCCCGCTTAACATTTAGGACTTAATTGATAAAGATGTTTACGTTGGAGGATGAAATGATTGAATAGTTGTCAAATAACAGCCTCTAATATTTGCTAGCATGCTCGTAAAGAGGTTAACTATAACTCGAGTTATTTTTGTACAAAATCTGTTGGTAGGAGAATTTATTCAAACTTTTTTTTAAGACCAGGTACCACAAAAGATAGAGAAACTTTACTTCTTAACTTGGAGAGAACAGCCAGATTTTTGGCAAACCCAGGGATCCTTAGAGTAGCAATATATATATTGGTCTCGTAGGCAAAAGCTGAAAAAGGTATTTCAGTCGTTTGAGACCAAAACTGAGTGATGACCTGATCGTGTAGCTGAAAAACGAAGACGCACTACCAATTGGCTTTACACGAAGTCGTATGAAACGAAAGACGGAACTCGTAAACATTAAGTTTTCTATGGTGAAAGCTACTTTAGGTCCGGCAGTTTGTTGTGAAGTGTTACTGACAACGTACAGTGCACTATTGGTACAAATCTCCACGGTGCTCGGTATCCAGAAAACACCAGTTTGAAGGCGATTCAAAGTGGACCTCATTTTGACCAAAACACGGCAAGGTTGAGCAAAAAGTACCACGCTTGTGCTGAAGCAAAGAAGCCTTTTATAGCCCGTCTTCTAGTTTAAGGCTGTTATATGTTTTGGCTTTTGCATTGTTCACTATATTCCGCAGACATGGGTGAAAATAAAATGAAGAACCAAAATAGCAACTGGAACAAATTTTGCAAATTATAAGTTCACGCTCTCTGTCCCGATACAACGACCAAAAAACTTGCAACAAACAACCAATAGTAGTTTATCAAATGGTTGTCTTTTCTGCTCTGGAAATGTTACCGATTCGGAGCTCTTATTTCTAATTATGAATAGCTTTTCATGCTAAAATTCCCACACTCTAAAAGATATTTTATACAGTGAATGTAATGGCTATTGATTTATGCATAGTGCTTATCTAATTGTATGTTTCGAAGCATAGTCCTTTAAGCGTTAAGAACACCGAATCTAGAACAAGCAAAAATATTGATATTATTTTTATTGGACAAAAATTTCTTTTTGAAGACTTTCTTTGTCAAGAATAACCTAATTTCTTTCAGTTTATTTTGCATATTTTTACTTTTTTTTTATAAAATACAACATGTAACGTCTTCTGCGCGGAGCCTCAATCAGTTTTTTTGTGGCTACTGCCTCGAAGAGGCGATGCCATCCTCATCGGGTTGAAAGTCCGTCCGTTCATGCGTAACATCAAACCACAAGTCAATcaagcttagcgttcttgcacattcactggagattacacaagcttttttttgcctttaatcgtaatacaatccaacaaaatacttacgtatgttctcgtatctcttgataatcctctgaacgagtttcaggcaatgtctatgaatttcagtaGACGTTCACACACCAACATACttgagattcatcgaaattgccagaaactcgttcagatgaccatcaagagatgcaagaagacaccttgagtattttgttcaaattttctgacgattaaaagcaaaaaaacgatcgctcaaaactcactgactaatttgtagtgaatcagcactaatgccaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P38976	Ras-like protein RAS2 OS=Hydra vulgaris OX=6087 GN=RAS2 PE=2 SV=1
P03967	Ras-like protein rasD OS=Dictyostelium discoideum OX=44689 GN=rasD PE=1 SV=2
P62070	Ras-related protein R-Ras2 OS=Homo sapiens OX=9606 GN=RRAS2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000339 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050305 all species →	Family	Small GTPase superfamily, Rab	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47980 all species →	LD44762P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0017157 all species →	Biological Process	regulation of exocytosis	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0905.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.