Gene detail

Detailed information of amic_s0913.g3.t1 in Acropora microphthalma

Genomic Location: sc0000913_pilon:9559...20870
NR annotation: XP_044184112.1, LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 6-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0913.g3.t1

TTGAGGAACAAAACTAATGTTGGTGCGGTGTTCAAGAACGATTATGTCTACCCACGCTCCATAGTGCTTTACCCTGAGATTGGGCGTATGTACTTCACGGATGACAATCCCAAAACGAAATCAATTATGCGAGCAACAATGGGAGGTTCTGATGAACTGGAATTGTTTCGAGCAGTTTGTCCTGGCGATCTGGCCGTTGATAAACAAGAACAGAAACTGTTCTGGACAAACACTGAGATGAAAAAAATTGAGTATGGCGACCTCACTGGAATGAACCAGGCTACACTGATTGAAAAGAATATATTAAAACCAGTTGGTCTTGTGGTGCATAAAGATTACGTGTACTGGATTGATAAAGACACTCGCAATGTCGTAAAGGTCAAGAAATATAACCACAGCTCACGAGAACCCGTGCATGCCTACGTTGACGATTTGTCGGACATTGCCGTGGTCGATATAACTACGAGCACAGATCACCACCCGTGCTACAACAACAACTGCACGCACCTCTGTTGGGTTGGAAAAGATGGTCATGCGAAGTGTTCCTGTCCTATGGACATGATTTTAAATGATGATAACTTGATTTGTGGAGCGCGAAAGAAATGCAAGCCAGATCAGTTTACATGCGCTAACAGGGTATGCATAACACGGAACTGGGTTTGTGATAACACGGACGACTGCAAAGACGGCTCTGATGAAATGGAAAATTGCACGAAATGCAAAGACGACGAGTACATTTGTGACAGTGGCCAATGTGTCGATTTTAAGAAGCGATGCGACTCAAAGTCTGACTGCGAAGATGGATCGGACGAGAGGGAAGAAAACTGCGGCAAACGCTGTGAATCGAATGAGTTCGGATGCGTCAAGGATGGTATTGTATATAAATGCATTCCACGTGACTGGGTCTGTGACCGCGGTAAAGACTGTTACGAGAACACTGACGAGATGATTTGCCACAAATCCAAAGTGTCAGAAGCATTTCTGCTGTTTTCCAGTAACGACAATATAAGAAGAATCTCCTTAGATACCAATAACGGTGCGGTGACTCGCTTGGTTAGTGTGAATGACGCACGAGCGTTAGATTTTAACGCACATGATATGCAGATTTACTGGACTGATGCCACTGAAAGGACGATAAGCAGAGCTTTCCTCAACGGCACTAACATCGAACCGATAATTGAAGTTGGCTTGTCCTCTCCCGATGGGTTGGCTGTGGACTGGATTGCACAGAACCTTTACTGGACGGACGGTCGTACTCATCGAATAGAAGTATCGCGGTTGGATGGTCGGCACAGAAAGTTGTTGATTTGGAAGAATTTATGGCAACCACATGAACTGGCGCTTGATCCAGTCTCGGGGCACATGTACTGGGTAACTGGTGGACGGAATTCAACAATAGAGATAGCTGACTTGGATGGATCTAATAGACGCATATTGTTCACTAATCCAAACCCTCCAACTGGCTTAACAATTGACTTTTCAACGGGACTTCTCTTCTGGGCCGATCAAGATGAGAGAAAGATTGAATGCGCCTACTTAAATGGTACAAATCGGCGAGTAGTTGTGTCAGGGCTGTCAGAGACATTGGCCATGACACAGTTCAAGGATTATATCTATTACGCTGATTGGTCGACAATTTACCGAGCAAACAAAACCAATGGATTGGATCAGACGCGGATTAAAAGAGGCATCGGCTTTGTGACGGATATACTTGTGTTTCACAGAAGCAGACAGGAAGTGACAGAAGAAACAAAGCGGAATAAAGTTCTTATTAAAGGATCGATTCCGACAAGGGCCACAGTTCTCCCAGCAATTAATCAAGAGCCAACAGATCGTGGAAAAAGACAGGAACTTTGGCTTTTGACAAGCTTAACAGGAAACACAGCTGTCAAAGGAGGGAACAGAATATTTGGGGAGGAGGTAGTTCGTGAGGTGGCTTCCCCTCCTACTTATGGTTATGTTGAAGCCATGAAGAACATGCTCTTCACTTTGCCAAAAGTGCAAATGAAGAAGGTGCTAGATGACTATGCTAAGAGGGCACCTGCACCTCTTAACTCACAGTTTCCAGATAAGCGAGGCAAGGAGGAAGCTGTTCAAGCTTATAAAGTCAGGAAACAGAAGAAAATGAAAACTCCTTTATACCCACCTGGTGCAGAACAAGATGTCTTAGAGCAGAACTCAAGAAGCAGGGTCAATTCAAAAAGCAGAAAGTCCAGTGGAGGGCATTGCAAACGAATGTGA

Transcript

amic_s0913.g3.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
Q91VN0	Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001295 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR051221 all species →	Family	Low-density lipoprotein receptor-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722 all species →	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006898 all species →	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0042562 all species →	Molecular Function	hormone binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0913.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.