Gene detail

Detailed information of amic_s0916.g2.t2 in Acropora microphthalma

Genomic Location: sc0000916_pilon:3936...14292
NR annotation: XP_044177433.1, uncharacterized protein LOC122959876 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0916.g2.t2

ATGGGAACAATGAAGCGATCGATATTTTGGAGATCCAATTCGAATGAACCACGGTATACGAATATTATTTTCTACTCAGTGCAGCGAATGGATGGCAGCGGTAAGACCACCTACGGTTATTCCGCCCTTCATACTGCCGTTATCTCAAGAAATCTTAAAGTTGTTCAAGCTCTGACAAACCGAGCAAACTCTACTGGGAGAAACTTTCTTGATTCCAGAGATTCCATGGGATTCACACCTCTGCACTTAGCTGCAATGCAAGGAAGCCGAGAGCTGCTTGAAATGTTGCTGAAAGCCGGATGTGACGTCAACAGTCGTACAAAAGAAGGGATGACGTCGTTACATATTTGCAGCGAAGGCACTGGTACTGAAGACATTTTATTCACTCTGGCAACTGCATCGTGTGACGTCAACGCGCGGAATAAACTGGGAAGGACTGCACTTCATCTGGCAGCCAAACAGGGAAACACGGAAAACTTGAAAAAACTTCTCGATATTGGTTGCAACAAAAATGTTAAAGACAAGCTTGGCTTTACTGCAGTTGGTTTAGCTTTCAAATATAACCAAAAGCAAAGCGCAGAGATTTTACTTCATTACAAACCTAAGCGGAATCGTTGGTCTTCCCAAGAAAGCTGCTTAGATGAAGGCGAAAATCACTCAGTCAAACATAGAGATAAGAAAGGAAAATGTCTATCAGAAACAAAGAATTTACGTGTTCTCAATGCTTCGCCCTTGAAGCTTGATAAACAGGATTCTTTGGCCTTGATGAAAAGACGTTATTTTGTTCTCAAAGTTTGCACCGCGATGATCTTACAACTGGAGGGAAAAGTATCTAAAAGAAACAGCATATCTTGTTTCATTCACCGTTGCAATGTGGTCTTGCTGTCAATCAAGAGGGATAAATTAGACGGTTTGAGCATCTCGAGACGAGCGGCTTTCTTGGAGTCCTTCTTGGAAAGAAAACTGCCTACTTTGCTTCTTGGTTGCTCATCGCCTACTTCGTCTAGCTCGGGCGCCGAGTTATGGCTTATGACTTTAGATGCCAGATTAGAGCATCTGTGCCTCTGTAACTTTAAAAGGGGCGTTTTAAAGAAGCGAGATTCGCAGACATTGGGTCTAGACATTTTGTGGAAGCTTTTAGCGAATTTGAAAAGTTCTTTGGCCAGTTCCAGTATCCTTAGTTCATGGTCTATTTTGCCTCAGAGACATACTTTTTCTTGGACTTTAGTGAAATCCACGCTTAAAAGAAAGGACGACATCAAAACTGCTCTTGCAGACTTTATGCAAATCTTTGCGAAAGCTTGCGACATGCAAACGTCGCAGAAAATTATCGATAGTGATTTTGGCAAAACTGGCGAAGACAAATCCATCAACGATTCTTTTATAGAAAATAACAAATTGGATATTCAGACGAGCAATTTTGTCATGACATGTAAATTGGAGGATTCCCTTTGTTTTTTAGATCACGTGATAGATTTAAACGTTATGCCTCCTTCTTTCGTTGAAGATGTATTGGAGTTCTGTTTTCAGAATTTTCACTTTCTCCGCTTTCTAAGCTACAGAGAATCTCTATTCAGCGCATTATTGGAAAAGTGCCTCTCTCGGACAGATAGCTGGACGGCGGACAAAATTGCGAAGCTATTCCTACGGGTCAGCGTTGTATTATGGAGTGACCAGCGGTTATTGTCAAAATGCGCAGACGCTGTAATGATGCAGGGTATTGCTCATTGTGATTGTGTCTCTCTTGGAACCTGTATCTTAGTGCGAATGGGTCTTCTAAAAGGGGAATGTGACACAATCACGCAGGTGGATCTCACGGGCCCCCTTTTAGCCCTTGACCACGTATTTGCAAGCGACTATTTCCCGAGACATCTCGCCGCAATCTTCGCATCTTTTCTGTCAAAATCAAGCCCCAGGCTGTTTGGATTGGATGAGTTGCGACTTCGAGCACTCGCCTCTGCGGTCGCCAAGGAAATTCTTCCGACCTCATGGCAGGAAGCTGAAAGTGACGCTGGAAAGAGCTTCAAGCGGATTTGCGATATCATGTCGCTCGAAGAAGAGTGGGAACCTCTCTTTGAGTGTGCCGACGTTTTTCTTTCGTGTGTTGTTGAAAGACTCAAATGCAACATGTTGCGAGTATGTGAAAGTGTCTTAAAATATCTTGGTTTGCTGAAAAGTGAGTCATGTATTGAAATTGTTAGAAATATCAACTGCGCTTTGAAACTTCTTCATCACATGGCCAAGCAAAGCTACTTTCCACCTGAATCGAAAACAATCTTTTTGTCTTTTCTTCGAAAACCTCATCCTTCTCTTAAGGAATGCTGCAAAGAAGTTGAAGAGCTCCTAACTACATTACAAAACACCAAAGCTGGTTTGTAA

Transcript

amic_s0916.g2.t2

ATTTCAGGTTGACATCAGAACCAATCGAAAGTGAACAGCCTGGAGAACGACCACAAATTACTTTAAATAGCTGCATGCAGTATTGAGCAAAAAAAGAACATTTCTGTTTCCTACCATGCTCTTTGTTTTTGTTTTTTTTGAAAACCGTTCCATTAAGAACCGACTTTTTAAGAGCAAACAAAAATGAAAGGTCACCGAGATTAGGTTTTCGTCTAATCATTACTCAATTAATGAACGATCAACATTTTTCGTGTTTGTCAAGGGATTCGATGACTAATGCGAAACATCAATGCGCGACATTCCACTGCGGATCAAGGGTGTCACGATAATAATCCGTCCTGTGAGATTGTTGCTATGCAATAGATCTTGAAGGAAATATGTTATCACTTGAACCCATGAGCCAGATGTGACAATCTTTAGGCGAAATACAGTGTATTGAAACTGATGAAGCACTCTGCTCTTCCGCAAAGGTGTTCGATAAGTGAAAAGAAAACACTCTTTTCGGTGTTTTGTCTAAAGGTATGTTAGATGTTTGTATAAACTTGTAAAATGATCACGACACATGGTCCGAAAAATCTATCCGTTCCGCGCGAATTCAGAAATCCCACCATCAACGAATTACCAGTACTCGCACTACGAGTGAAATATTGAGTTGCTCACTATAACTTTCAATCGGAGCGATGGGAACAATGAAGCGATCGATATTTTGGAGATCCAATTCGAATGAACCACGGTATACGAATATTATTTTCTACTCAGTGCAGCGAATGGATGGCAGCGGTAAGACCACCTACGGTTATTCCGCCCTTCATACTGCCGTTATCTCAAGAAATCTTAAAGTTGTTCAAGCTCTGACAAACCGAGCAAACTCTACTGGGAGAAACTTTCTTGATTCCAGAGATTCCATGGGATTCACACCTCTGCACTTAGCTGCAATGCAAGGAAGCCGAGAGCTGCTTGAAATGTTGCTGAAAGCCGGATGTGACGTCAACAGTCGTACAAAAGAAGGGATGACGTCGTTACATATTTGCAGCGAAGGCACTGGTACTGAAGACATTTTATTCACTCTGGCAACTGCATCGTGTGACGTCAACGCGCGGAATAAACTGGGAAGGACTGCACTTCATCTGGCAGCCAAACAGGGAAACACGGAAAACTTGAAAAAACTTCTCGATATTGGTTGCAACAAAAATGTTAAAGACAAGCTTGGCTTTACTGCAGTTGGTTTAGCTTTCAAATATAACCAAAAGCAAAGCGCAGAGATTTTACTTCATTACAAACCTAAGCGGAATCGTTGGTCTTCCCAAGAAAGCTGCTTAGATGAAGGCGAAAATCACTCAGTCAAACATAGAGATAAGAAAGGAAAATGTCTATCAGAAACAAAGAATTTACGTGTTCTCAATGCTTCGCCCTTGAAGCTTGATAAACAGGATTCTTTGGCCTTGATGAAAAGACGTTATTTTGTTCTCAAAGTTTGCACCGCGATGATCTTACAACTGGAGGGAAAAGTATCTAAAAGAAACAGCATATCTTGTTTCATTCACCGTTGCAATGTGGTCTTGCTGTCAATCAAGAGGGATAAATTAGACGGTTTGAGCATCTCGAGACGAGCGGCTTTCTTGGAGTCCTTCTTGGAAAGAAAACTGCCTACTTTGCTTCTTGGTTGCTCATCGCCTACTTCGTCTAGCTCGGGCGCCGAGTTATGGCTTATGACTTTAGATGCCAGATTAGAGCATCTGTGCCTCTGTAACTTTAAAAGGGGCGTTTTAAAGAAGCGAGATTCGCAGACATTGGGTCTAGACATTTTGTGGAAGCTTTTAGCGAATTTGAAAAGTTCTTTGGCCAGTTCCAGTATCCTTAGTTCATGGTCTATTTTGCCTCAGAGACATACTTTTTCTTGGACTTTAGTGAAATCCACGCTTAAAAGAAAGGACGACATCAAAACTGCTCTTGCAGACTTTATGCAAATCTTTGCGAAAGCTTGCGACATGCAAACGTCGCAGAAAATTATCGATAGTGATTTTGGCAAAACTGGCGAAGACAAATCCATCAACGATTCTTTTATAGAAAATAACAAATTGGATATTCAGACGAGCAATTTTGTCATGACATGTAAATTGGAGGATTCCCTTTGTTTTTTAGATCACGTGATAGATTTAAACGTTATGCCTCCTTCTTTCGTTGAAGATGTATTGGAGTTCTGTTTTCAGAATTTTCACTTTCTCCGCTTTCTAAGCTACAGAGAATCTCTATTCAGCGCATTATTGGAAAAGTGCCTCTCTCGGACAGATAGCTGGACGGCGGACAAAATTGCGAAGCTATTCCTACGGGTCAGCGTTGTATTATGGAGTGACCAGCGGTTATTGTCAAAATGCGCAGACGCTGTAATGATGCAGGGTATTGCTCATTGTGATTGTGTCTCTCTTGGAACCTGTATCTTAGTGCGAATGGGTCTTCTAAAAGGGGAATGTGACACAATCACGCAGGTGGATCTCACGGGCCCCCTTTTAGCCCTTGACCACGTATTTGCAAGCGACTATTTCCCGAGACATCTCGCCGCAATCTTCGCATCTTTTCTGTCAAAATCAAGCCCCAGGCTGTTTGGATTGGATGAGTTGCGACTTCGAGCACTCGCCTCTGCGGTCGCCAAGGAAATTCTTCCGACCTCATGGCAGGAAGCTGAAAGTGACGCTGGAAAGAGCTTCAAGCGGATTTGCGATATCATGTCGCTCGAAGAAGAGTGGGAACCTCTCTTTGAGTGTGCCGACGTTTTTCTTTCGTGTGTTGTTGAAAGACTCAAATGCAACATGTTGCGAGTATGTGAAAGTGTCTTAAAATATCTTGGTTTGCTGAAAAGTGAGTCATGTATTGAAATTGTTAGAAATATCAACTGCGCTTTGAAACTTCTTCATCACATGGCCAAGCAAAGCTACTTTCCACCTGAATCGAAAACAATCTTTTTGTCTTTTCTTCGAAAACCTCATCCTTCTCTTAAGGAATGCTGCAAAGAAGTTGAAGAGCTCCTAACTACATTACAAAACACCAAAGCTGGTTTGTAAATAGGCTGACAGAGTCCAACGAGAATCGCCAGAAACATGAAGAGGGCCGACATCTTTTTGATGACTTTCGTCACGATACATTTCCTCATGATCATGTTGCAAGGCTGCCCGGTGAAATTCACAGTTCAAATTACCGACTTCGACAACGTGTTTGAGGAGAATATCGATGTTGATATTAAAGAAGATACCGAGACATTGCACGTGCCAGCAAGTGACGACCTGGTTGAAGCTTACGTCATCCATAACTTTAAAAAGAAACGTACAATGAACGTCTTGCCAGCGCAAGGCAAGTGTCTCTATACAAAGCTCGATAAAGACATACCAAATCCCAAGAAGATGATACGAAACTTCAATAAGAACAAGTATGTTTGCATCGAGTCTTCAGATGCCGAGGTGAAAAATATTACCCTGGTGACCAGGCAACAATTTAGGTTAAGGTCAAAGTTGCCTCGTGCTATGAGAAGAGCCTGCAAAAATCTTAAAATTTACCGGGCAGAACGACAACAAACATCAGACTCCAGCAAAAGAGATAACCCAGTTGAACGCGCTTGCACTGGAGAGGTTTGCCAAACTTGGGTCACCTGTATTAGGACCTGTCACTCAGGCCCCAGGTGTCAGCTGTGTGTAAAAACAAGAATCTGTGAAAATCTTTGCCAGCGTAAGCATTAAGCTTTTTGGCAACACATGGTATAAAGTTCTCCAAACAATGTACTCAAGAAAGGAAAATACTCACTGTAGAAAATTCATTCAGAAGGTTGTTGATGCGATGAACATAAATAAAGTGTTGACACCCTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009416 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR050663 all species →	Family	Ankyrin Repeat and SOCS Box	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193 all species →	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0916.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.