Gene detail

Detailed information of amic_s1016.g4.t1 in Acropora microphthalma

Genomic Location: sc0001016_pilon:13616...15622
NR annotation: XP_029182686.2, fukutin-related protein-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s1016.g4.t1

AAGTATTCGTGTTTGCAAGATATGCGTTCTTCAAATGTGTGATATTTTTGCAAAAACTCGTCGACACAAGTTTCGCAGTTTCTCTTTAATGCCAATTTCAAAGTGTCAAATTGTTTTGGTCTGTGCCATAATTTTCAACTGTTTGATACTGTTCTACGTTTCTCATGTGCACAACATCAATGGGAGCTGGTTGCGACACAAGCAAGATGCAGAATTCAAGAAGAGAATTGACGATGGAAAATTGAATGCCTCAGCTGATTCGCGCCATGAATTCGAAAAAGATGTAACCATAGTTTTTCTTGAATTCGAGGAGTTCGAGAATGACGTCGACCGGACAATCAGTTCTATCTTTTCTCAGTTTCCAAACATCCATATCGTAGTCATTTCACAAAGAAGACCTTATCCACCATTAGATTTGCCAGCTGGAAAAGTTCTTGTGGTCATACAAGAAGTCCCTCCTGACCAAAAACAGTCATCTGGGAGGCCAGAAAATTTCATTACAACACCATATGTCATGTTTGTACCAGATGGTGTGCGATTTGATTCTGCTAGCTTGCCAATTACAATGCTTGCTGAATTAAAGTCAATGGCAACTATAAAACCTCAATTGAAAGTTATCGCAGTACCAATAAATACAAGGAAAGCAAATGAATGCAAGAAACTAACTTTTGACATCAAACGCTGGACATTAGAGTATGCAGTGTCTGAGGAAGAAGCACAAAGTTATTATAGGACTTGTGATGCAGTAGGCCCAAATCAAGTGATTTTGTTAAAAGCAGCATTCCTGCACAGCCTTAGTGCGCCTTACTTGCGACCCTTTCCTGAGAGCTTATTTATTCAAGCATCTGTGCACCATATCAAAACAAAGCTTCTACATAAAATGTCTTTCCCACAAGGGTTTAGACTGTTTAAAAATCCCCATACTCAGTGGAAGTATGAAAACAATGTGAAAATACGAAAAGTTGCAATGTTCAAAAAGCTAGGCATTAAAAGAGTTTCTTCCCCAATGGGAAAAATAGATTGGTATGGCTGTGGTAAGAACACAGGGCGCTGCTTTGGTACTGTTTATGACGACATGCCTGATTACCTGTACATGTCAAGATGGACTCCACCCTGCTGTCTCCAACATTTGCGAGAAACAGCTCGTCATCTGTTTAGCATTTTGAAAAGGGATGGTGTGCATTACTGGTTAGAGGGAGGCAGTTTGCTAGGTGCTGCTCGCTATGGTGATATTATTCCATGGGATTATGATATTGACATTGGAATCTATCAGCATGAAATTGAAAAGTGTTCATATCTGGCTGAAGCAGAAAAACTTTCAAATGCTGGAAAGAAGTTTGTAGATGAACAAGGGTTCACCTGGGAAAAAGCTATCGAAGGAGAATTCTACAGAATTCAATATAGTGAGTTTAATCATTTGCATGTGGACATTTTTCCTTTTTATGAAAAGGATGGCATTATGACCAAGAATACATGGTTTGAAACCCACAGACAAGACAGGGAATTTCCTGCTCATTATTTGAAACCTTTAGGAACAATTGATTTTATTGGTATGGAAGCTTCTGCTCCGAACCACGTGAGGGACTTTTTAGAGTTGAAATTTGGTAAAGGTGTTATCGAAAACCCACATTATCCTAATCCACAAAAGCTGAAGAAGAAATCTTAACTTTCAGTTTCTTGGTAAGGTTGCTTTTCAGCAATGGACTACTGTCAGTGGCTCTTCCGGTGTTCTGGTTTCAGATCTAATAGGGATTTGAAAAGGCATTATTTGTGAGGAGCATCCTGAGAAGAAAATCTCAGGGCATAATTTTTCATAAGAGATGAGATAACAAAATGAACCTACTCAGGGTATTTGGTTAGGAAATCTCAACCCAGGGTTAGATGTGCCAGGCCCACTTTCGTTCTCTACTCCCAGTTTCTGAGACTAAAACAAACAGAGCCATACCACTGTGTACCAGAAGAATATGGAAGAATCAGTCATGACGACAATGAACAAGATTGCACACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H9S5	Ribitol 5-phosphate transferase FKRP OS=Homo sapiens OX=9606 GN=FKRP PE=1 SV=1
Q8CG64	Ribitol 5-phosphate transferase FKRP OS=Mus musculus OX=10090 GN=Fkrp PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007411 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04991 all species →	LicD	LicD family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052613 all species →	Family	LicD transferase	Interproscan
IPR007074 all species →	Family	LicD family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13627 all species →	FUKUTIN RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19873	FKRP; fukutin-related protein	EC:2.7.8.-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.