Gene detail

Detailed information of amic_s1087.g2.t1 in Acropora microphthalma

Genomic Location: sc0001087_pilon:25066...30075
NR annotation: XP_029190782.2, RNA-binding protein FUS-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92804	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1
Q61545	RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2
Q01844	RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003922 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR034870 all species →	Family	TAF15/EWS/TLS family	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23238 all species →	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13098	TLS, FUS; RNA-binding protein FUS	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.