Detailed information of amic_s1270.g3.t1 in Acropora microphthalma

Genomic Location: sc0001270_pilon:23752...44499
NR annotation: XP_029199616.1, WD40 repeat-containing protein SMU1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P4J8WD40 repeat-containing protein SMU1 OS=Xenopus tropicalis OX=8364 GN=smu1 PE=2 SV=1
Q2TBS9WD40 repeat-containing protein SMU1 OS=Bos taurus OX=9913 GN=SMU1 PE=2 SV=1
Q5ZME8WD40 repeat-containing protein SMU1 OS=Gallus gallus OX=9031 GN=SMU1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009244 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17814
all species →		LisH_TPLLisH-like dimerisation domainDomainInterproscan
PF04505
all species →		CD225Interferon-induced transmembrane proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006595
all species →		DomainCTLH, C-terminal LisH motifInterproscan
IPR006594
all species →		Conserved_siteLIS1 homology motifInterproscan
IPR045184
all species →		FamilyWD40 repeat-containing protein SMU1Interproscan
IPR007593
all species →		FamilyCD225/Dispanin familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22848
all species →		WD40 REPEAT PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0008380
all species →		Biological ProcessRNA splicingInterproscan
GO:0071011
all species →		Cellular Componentprecatalytic spliceosomeInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s1270.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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