Gene detail

Detailed information of amic_s1380.g1.t1 in Acropora microphthalma

Genomic Location: sc0001380_pilon:1...23354
NR annotation: XP_029205498.2, host cell factor 2-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s1380.g1.t1

TATCTGAATGACCTTTACGTGATTGATATACGGAACAGTAACAACTTACAATGGGAAATACCTTCAACTGTTGGCTCAACACCCTCCCCACGAGAATCACACACATGTGTTGCAACCTCGGACTCCGACAACAAAAGACCCAGGCTCATCGTGTATGGAGGAATGAGTGGATGCCGACTGGGGGATCTTTATCAGTTAGATATTGAATCAATGACGTGGTCTAAGCCAGCTATTCACAATATGATTCCTCTTCCAAGAAGTCTTCATTCTGCTACAGTCATTGGAAAGAGAATGTTTGTCTTTGGTGGCTGGGTGCCTCTTGTAATGGATGAAGTGAAAGGACGACAAGATGAAAAAGAGTGGAAATGCACAAATTCTCTGGCCTGTTTGAATTTAGAAACAATGTCTTGGGAGAATGTTGTGATGGATCAGTATGATGACTCAATTCCAAGAGCCAGGGCAGGACACTGCAGTGTAGCTATCAACACTAGATTGTACATGTGGAGTGGCAGAGATGGCTACAGAAAAGCTTGGAACAACCAGGTCTGCTGCAAAGACTTGTGGTTTCTTGAAACAGAAAAACCTCCCGCTCCAAGTCGTGTGCAGTTAGTACGAGCAAGTACCGCAACCCTGGAGGTTTGCTGGGGGACAGTACCAACTGCTGACGCTTACCTGCTGCAGTTGCAGAAATACGAACTTCCTACCACCTCTCCAGCCACCCAGTCTAAGCCATCTTTCTCGCCAAGTGCATCAGGAAGCTCTCTCATGATGAAGACTCCAAGCCCAGCGGCTACAACTCCACCCAAGGTAGCAGTGAAGGCATCACCAAGCAACACAGCCCCAGCTACACCAACAGGCCATTTGGGAAATACGCAGAAGGTTATGATGCCATCTCCGTCTCATCCTGCCAAGCCCAAGGTGCAACCAGGAACGGCAACCGTAAAACCAGTGAGTACTGTGCAAAGGCAGAGTTCTACTGCAAGTTCAGTGCATGTTGCAAGTAAGTCCTCTGCGGTGCCAACCACTAGTGTTTCCACGGCACATGCATCAACAGCTTCAGGTGTTAAGGCTGTTGTCCAAGGTCAGGTAGTCAGTCAAAGCCAGGGAGCCTCGGCGACACCGATAGCCAACCAGGGACTTGCTTTGTTGCGAACACCAGTGCAGCTCCCACCAGGTGTGCAAGCCACCATGATAACCAACGCACAAGGAATCCCAGTCATGCGACTTCAAGGGACTGGCATTCAGGGCACCGCACCAGTAACCATCGTCACTTCGCAAGTAGGAGCAACACAGCTTCAGGGTGCAACTATTGTCCGCATGGCGTCTCCCATTGGAACGGTCTCCAGTGGGGCCACGTCAGGGACCGTGCTACGGTTACCAGTGCAGAGTGCAGGTACCAATGTGCCAGGGACAGCAGTTCTTAAAATCCCAGTTACTTCTTCAGTCCAGATGCCAGGCACAGCCGGCTTGACACTGACAGCTGTGGCTGGGAGCAGTGGCCAGACTGTGATTCGACAACAGCTCCCAGTTACTCTCCCTGCCAACTTGCCCCCCGGAACGCAGCTTAAAATGGGACCGCAAGGTCAGCTGACAGCGGTAGGGCCAGGTGGTATTCCTGTGCAGTTAACATTGCAAAACGTCAAAGGCCAACAAGTTGCCACCGGAATCCAATTGCAGCAAGCAGCTGCTTTGGGAACTCCAACGGTCGTTCAGCTAACTGGTGCGTCACCGGTCAAGGTTAGTACCTCTCAGCTGTCACCACAAAAAGTTGTGCAAGTAACGCAAAGCTCCGTAGCGAGCAACAGACCAGCAGTAACCGTGACAACCGTATCAGCTACCAAATTAGTGATGACCACAGCCTCTGTGACGCGACCATCCGCCGCTGTGGCAGGACAGACTGTGACTGTCACAAAGAAGACTGCGCCTACTGTGGTATCATCGGCCGCTGGTGTACTCCATCCTCAGAAAACGTCTTCAGTAACCTCAGTTGCACCCCGCTCTACTGCGGTCGTGACCTCTCCCTCTTCCGGCAAGCAGACCACTGCAGTAACCACGACAACTACACAGACCACGAAACCAGCGGTAACAACCTCAGCGACTCCGTTGTTGGAAAGACCAACGACCACAGCGGCGTCAGTGCCAAAGACAACATCCACGGCGGAAGCTCAGGTGAAAGTTCAAGCGTCGCAACTGGTTACCACGTGTGTGACCCCTAAACTTATTACCACAGCAAGTAGTCTTACCACCACAGCGAGTACACCCGTAGTCAAAATAGCAAACACAGATACTACGTGTATTGCTAAATCGACCTCCCAAAATGTGACCAAAGCGGCAACTCCAGCGTCCACCCCCGCGAAGGCGGTGATCAGCGTTGCCGTGCCCACGGCCGCAGAATCGACAACGCCGGCTCTGGCGCAGATGTCCCGGTCAGCGGCTCCAAGCCTTCCAACCACTGCCAGCGTCAGATCAGTTGGAGTCAGTGGAGCACCTCTTGTTTCATCCGTAGCAACCTCTGCTTCCATAAGCACCCCAGTGGTCACTGCAACCTCGTCCGTGGCCGTCACTTCAGTGCCTACAACAACGGCAACAGGAATTTCCACAGCAAAAATTTCCACGAGTTTGACGACAGCCGACGCCGCAAGCTCTTCCCCAGTCACCTGCACTGCTGTGACTCGGACTGTGAATGGCGGAGCTGGGATCAAGGTTGAGCGAGTGGCTACTCCCACTTCAGCGTCAAAGGCACCCAAACTGACCAAAACCACTTACACGAGGAAAATTCAATTATCGAATCAATGGTACGATGTGGGAATTGTCAAAGGCATCTCTATGATTGTCTCACATTACTATCTGTCCACGGAAAATGCTACGAGTGACGAGTCGAACCTTGATGTGGAAAGTGGCTCTGAACAAAGTTTAAAGAAGCAAGAACTACTGACGTCAAGAGAAGTGACTAACGTCGAGAGCTTTCTAGAAGCAACACAGGAAAAGAAGTTGGATGTCTTGAAAGTTCTGGAGGATTTAATCGCTATTTATCAATCGAAGGGAGACGAGCAAAGTTTGAAACGTGCCGAAGCTGAGATGGAGAAAGTAACGACAGATACAGACAGAGAAATTGACACGGTAAAAGAGTTTTTGACCTCACTTACAGTGAAAGCATCGTCGATAAGCGATGCAGAGTCCCAAGGCGACCTGCTAGAAGAGAAGGCTCCAAAGTCAAACATAACAGGAGGGATATCG

Transcript

amic_s1380.g1.t1

ATATCTGAATGACCTTTACGTGATTGATATACGGAACAGTAACAACTTACAATGGGAAATACCTTCAACTGTTGGCTCAACACCCTCCCCACGAGAATCACACACATGTGTTGCAACCTCGGACTCCGACAACAAAAGACCCAGGCTCATCGTGTATGGAGGAATGAGTGGATGCCGACTGGGGGATCTTTATCAGTTAGATATTGAATCAATGACGTGGTCTAAGCCAGCTATTCACAATATGATTCCTCTTCCAAGAAGTCTTCATTCTGCTACAGTCATTGGAAAGAGAATGTTTGTCTTTGGTGGCTGGGTGCCTCTTGTAATGGATGAAGTGAAAGGACGACAAGATGAAAAAGAGTGGAAATGCACAAATTCTCTGGCCTGTTTGAATTTAGAAACAATGTCTTGGGAGAATGTTGTGATGGATCAGTATGATGACTCAATTCCAAGAGCCAGGGCAGGACACTGCAGTGTAGCTATCAACACTAGATTGTACATGTGGAGTGGCAGAGATGGCTACAGAAAAGCTTGGAACAACCAGGTCTGCTGCAAAGACTTGTGGTTTCTTGAAACAGAAAAACCTCCCGCTCCAAGTCGTGTGCAGTTAGTACGAGCAAGTACCGCAACCCTGGAGGTTTGCTGGGGGACAGTACCAACTGCTGACGCTTACCTGCTGCAGTTGCAGAAATACGAACTTCCTACCACCTCTCCAGCCACCCAGTCTAAGCCATCTTTCTCGCCAAGTGCATCAGGAAGCTCTCTCATGATGAAGACTCCAAGCCCAGCGGCTACAACTCCACCCAAGGTAGCAGTGAAGGCATCACCAAGCAACACAGCCCCAGCTACACCAACAGGCCATTTGGGAAATACGCAGAAGGTTATGATGCCATCTCCGTCTCATCCTGCCAAGCCCAAGGTGCAACCAGGAACGGCAACCGTAAAACCAGTGAGTACTGTGCAAAGGCAGAGTTCTACTGCAAGTTCAGTGCATGTTGCAAGTAAGTCCTCTGCGGTGCCAACCACTAGTGTTTCCACGGCACATGCATCAACAGCTTCAGGTGTTAAGGCTGTTGTCCAAGGTCAGGTAGTCAGTCAAAGCCAGGGAGCCTCGGCGACACCGATAGCCAACCAGGGACTTGCTTTGTTGCGAACACCAGTGCAGCTCCCACCAGGTGTGCAAGCCACCATGATAACCAACGCACAAGGAATCCCAGTCATGCGACTTCAAGGGACTGGCATTCAGGGCACCGCACCAGTAACCATCGTCACTTCGCAAGTAGGAGCAACACAGCTTCAGGGTGCAACTATTGTCCGCATGGCGTCTCCCATTGGAACGGTCTCCAGTGGGGCCACGTCAGGGACCGTGCTACGGTTACCAGTGCAGAGTGCAGGTACCAATGTGCCAGGGACAGCAGTTCTTAAAATCCCAGTTACTTCTTCAGTCCAGATGCCAGGCACAGCCGGCTTGACACTGACAGCTGTGGCTGGGAGCAGTGGCCAGACTGTGATTCGACAACAGCTCCCAGTTACTCTCCCTGCCAACTTGCCCCCCGGAACGCAGCTTAAAATGGGACCGCAAGGTCAGCTGACAGCGGTAGGGCCAGGTGGTATTCCTGTGCAGTTAACATTGCAAAACGTCAAAGGCCAACAAGTTGCCACCGGAATCCAATTGCAGCAAGCAGCTGCTTTGGGAACTCCAACGGTCGTTCAGCTAACTGGTGCGTCACCGGTCAAGGTTAGTACCTCTCAGCTGTCACCACAAAAAGTTGTGCAAGTAACGCAAAGCTCCGTAGCGAGCAACAGACCAGCAGTAACCGTGACAACCGTATCAGCTACCAAATTAGTGATGACCACAGCCTCTGTGACGCGACCATCCGCCGCTGTGGCAGGACAGACTGTGACTGTCACAAAGAAGACTGCGCCTACTGTGGTATCATCGGCCGCTGGTGTACTCCATCCTCAGAAAACGTCTTCAGTAACCTCAGTTGCACCCCGCTCTACTGCGGTCGTGACCTCTCCCTCTTCCGGCAAGCAGACCACTGCAGTAACCACGACAACTACACAGACCACGAAACCAGCGGTAACAACCTCAGCGACTCCGTTGTTGGAAAGACCAACGACCACAGCGGCGTCAGTGCCAAAGACAACATCCACGGCGGAAGCTCAGGTGAAAGTTCAAGCGTCGCAACTGGTTACCACGTGTGTGACCCCTAAACTTATTACCACAGCAAGTAGTCTTACCACCACAGCGAGTACACCCGTAGTCAAAATAGCAAACACAGATACTACGTGTATTGCTAAATCGACCTCCCAAAATGTGACCAAAGCGGCAACTCCAGCGTCCACCCCCGCGAAGGCGGTGATCAGCGTTGCCGTGCCCACGGCCGCAGAATCGACAACGCCGGCTCTGGCGCAGATGTCCCGGTCAGCGGCTCCAAGCCTTCCAACCACTGCCAGCGTCAGATCAGTTGGAGTCAGTGGAGCACCTCTTGTTTCATCCGTAGCAACCTCTGCTTCCATAAGCACCCCAGTGGTCACTGCAACCTCGTCCGTGGCCGTCACTTCAGTGCCTACAACAACGGCAACAGGAATTTCCACAGCAAAAATTTCCACGAGTTTGACGACAGCCGACGCCGCAAGCTCTTCCCCAGTCACCTGCACTGCTGTGACTCGGACTGTGAATGGCGGAGCTGGGATCAAGGTTGAGCGAGTGGCTACTCCCACTTCAGCGTCAAAGGCACCCAAACTGACCAAAACCACTTACACGAGGAAAATTCAATTATCGAATCAATGGTACGATGTGGGAATTGTCAAAGGCATCTCTATGATTGTCTCACATTACTATCTGTCCACGGAAAATGCTACGAGTGACGAGTCGAACCTTGATGTGGAAAGTGGCTCTGAACAAAGTTTAAAGAAGCAAGAACTACTGACGTCAAGAGAAGTGACTAACGTCGAGAGCTTTCTAGAAGCAACACAGGAAAAGAAGTTGGATGTCTTGAAAGTTCTGGAGGATTTAATCGCTATTTATCAATCGAAGGGAGACGAGCAAAGTTTGAAACGTGCCGAAGCTGAGATGGAGAAAGTAACGACAGATACAGACAGAGAAATTGACACGGTAAAAGAGTTTTTGACCTCACTTACAGTGAAAGCATCGTCGATAAGCGATGCAGAGTCCCAAGGCGACCTGCTAGAAGAGAAGGCTCCAAAGTCAAACATAACAGGAGGGATATCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3ZN95	Host cell factor 1 OS=Rattus norvegicus OX=10116 GN=Hcfc1 PE=1 SV=1
Q61191	Host cell factor 1 OS=Mus musculus OX=10090 GN=Hcfc1 PE=1 SV=2
P51611	Host cell factor 1 OS=Mesocricetus auratus OX=10036 GN=HCFC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004529 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13854 all species →	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011043 all species →	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR043536 all species →	Family	Host cell factor	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46003 all species →	HOST CELL FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035097 all species →	Cellular Component	histone methyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14966	HCFC1; host cell factor 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.