Gene detail

Detailed information of amic_s1507.g1.t1 in Acropora microphthalma

Genomic Location: sc0001507_pilon:1...6530
NR annotation: XP_015774705.1, PREDICTED: uncharacterized protein LOC107352897 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s1507.g1.t1

AAAAATGTGAGGTTAAGAACCCGCCGGTTTTCCGGAAGTACTCCAGACAACCAAGACCTTATTGTAAAGGCTGTGAGAAAGGAAATAAACAAGACCATTTCCTCTCTTAAGCCTGAGGCATTTTGCTCATCCAAGGAACAGATATGCGTACAGGGTCCACCGGGAATTCCCGGCTCGAAGGGGTCACGTGGTAAAAGAGGACCGCGTGGAAACACTGGGCGAAAAGGATCACGGGGGTTTACCGGCGACCCAGGCCCTCATGGTAAGCAGGGAATCCAGGGTCCTCCCGGTCAAAAAGGGGCTCAAGGAGAGAAAGGAGTTCCGGGTCCCAGAGGATATCCGGGTGTAAAAGGAGATGCCGGTGAATCCATTTCAGCCCCTACGGTTGTTATCTCACCGATGATTCAAACCCTTAGAGAAAATCAGAGTGCTATCTTCCGGTGTTCAGCGACCGGAAATCCAAAACCGAGCGTGACGTGGTTTCGATCTGATAGGAACTGGACTGGCCATTTCCGGTATCAGTCAGATGGTAGACTTGAGGTTCGTGGCGTGAGTCTCATAGAAGCAGGAGTATACACATGTGTCGCTAAAAATGTGCTTGGCGCAATGAATAAATCAGCAATTTTAACAGTTGAAGTGCCTCCTCGTGTCCAACTTGCCCCAGGTCCCACTCACGTCAAAATTGGTGAAAGGGTCACCCTACCTCGTTGTAAAGTGACTGGATATCCTGTTCCTGTTGTAACGTGGAGGAAACTCGGTGGGGTGTTGGCGACGGAAAGAGCCGTGTATGCAGAGGGATCACTAACTGTAGTTGGAGCCATCAAATCTGATACAGGACCTTATCAGTGTAGAGCAAAGAATAATCTGGGGGAATCCTCTGCAGTTACAACATTGGTTGTTTGGACTAAGCCAAAATTTGTCTTAAGACCGCCGAGTAGGGCTCACAAAAGAAGTGGTCAAAATCTGCTTCTCAATTGCAAAGCAAGCGCTCAAGCTTTGATTTTGTGGCGACGCGTTGGGGGAGACTGGATAGAAGACCGAATGAAAGTGAAAAATGGGACGTTGGAGATTTCTTCCCTGAGAAAATCGGATTCAGGATCTTACATTTGTGAAGCCAAGTCGCTCTTCTATACTATCAGGGCTACTACCACTTTACGAGTCGATTTTCCACCGGTCCTAAACTTGACGACGAATGGTCGCAAAGGAAGATTTGGCGTAATTCAGAATTTCACTGTTCCGACAACCGGGCGGTACAAAATCAAGGCATGGGGCGCACGGGGAGGAACACACTCCTACAACTATGGATACAAGCCAGGGACTTACTATGGAGGCAAAGGAGCTCTTAAAGAGGGAACATTTACACTGACTGAAGGAACAGTACTGAATATTGTGGTTGGACACAGAGGAGGAGATTCAGTGGAGGTGCAAGGAGGTCGGTACACTAGCAAGAGCGCAGCGGAACTGGGATTGTCAGTGGAAGACAATGCTGGAACAGGGGGAGGCGGAGGTAGTTTTGTTTATACTTCAAGTAACGTTCTTTTGCTGGCTGCCGGAGGGGGAGGGGGTGCGTCTGCAGGATATAATGGGGTGGATGGTCATGCCGGTACTAGTGGCACTAGTAGCGTAGGGATAGATTCTTCGAAAAGCAGAAGTGGGGGGACCGGGGGACAGCCAGGTCAGTGCAATAAGGTAGGTGGGAATTTCCATGGAGGGGTTGTTGCAGGTTGGTTGTCACAGGGTTGTGCTAGGGAAGGTTCATCGCATGGGGAGATGGGTGGGTCACGTGATCAGGGTTGGGTAGGAGGAAGAGCAGGGGGAATGAATAGTGGAAGCAATGGAGGACCACCCCCTGGAGCAGTGGGAGGATTTGGAGGTGGGGGTGGAGGATCTGAAGATAACGGTGCATCAGGGGGTGGGGGTGGGTACTCTGGAGGAGGAAGCGGCACTCACGCAAATCAAGCCGGAGGGGGAGGGGGCTCGTATTGTAGTGGTTCGAGCTGTTCGGGTTTGTCTGGCAGCAACTCCAACGATGATGGCATGGTGCAAATAATTGAATTATCTGACTAA

Transcript

amic_s1507.g1.t1

ATAAAAATGTGAGGTTAAGAACCCGCCGGTTTTCCGGAAGTACTCCAGACAACCAAGACCTTATTGTAAAGGCTGTGAGAAAGGAAATAAACAAGACCATTTCCTCTCTTAAGCCTGAGGCATTTTGCTCATCCAAGGAACAGATATGCGTACAGGGTCCACCGGGAATTCCCGGCTCGAAGGGGTCACGTGGTAAAAGAGGACCGCGTGGAAACACTGGGCGAAAAGGATCACGGGGGTTTACCGGCGACCCAGGCCCTCATGGTAAGCAGGGAATCCAGGGTCCTCCCGGTCAAAAAGGGGCTCAAGGAGAGAAAGGAGTTCCGGGTCCCAGAGGATATCCGGGTGTAAAAGGAGATGCCGGTGAATCCATTTCAGCCCCTACGGTTGTTATCTCACCGATGATTCAAACCCTTAGAGAAAATCAGAGTGCTATCTTCCGGTGTTCAGCGACCGGAAATCCAAAACCGAGCGTGACGTGGTTTCGATCTGATAGGAACTGGACTGGCCATTTCCGGTATCAGTCAGATGGTAGACTTGAGGTTCGTGGCGTGAGTCTCATAGAAGCAGGAGTATACACATGTGTCGCTAAAAATGTGCTTGGCGCAATGAATAAATCAGCAATTTTAACAGTTGAAGTGCCTCCTCGTGTCCAACTTGCCCCAGGTCCCACTCACGTCAAAATTGGTGAAAGGGTCACCCTACCTCGTTGTAAAGTGACTGGATATCCTGTTCCTGTTGTAACGTGGAGGAAACTCGGTGGGGTGTTGGCGACGGAAAGAGCCGTGTATGCAGAGGGATCACTAACTGTAGTTGGAGCCATCAAATCTGATACAGGACCTTATCAGTGTAGAGCAAAGAATAATCTGGGGGAATCCTCTGCAGTTACAACATTGGTTGTTTGGACTAAGCCAAAATTTGTCTTAAGACCGCCGAGTAGGGCTCACAAAAGAAGTGGTCAAAATCTGCTTCTCAATTGCAAAGCAAGCGCTCAAGCTTTGATTTTGTGGCGACGCGTTGGGGGAGACTGGATAGAAGACCGAATGAAAGTGAAAAATGGGACGTTGGAGATTTCTTCCCTGAGAAAATCGGATTCAGGATCTTACATTTGTGAAGCCAAGTCGCTCTTCTATACTATCAGGGCTACTACCACTTTACGAGTCGATTTTCCACCGGTCCTAAACTTGACGACGAATGGTCGCAAAGGAAGATTTGGCGTAATTCAGAATTTCACTGTTCCGACAACCGGGCGGTACAAAATCAAGGCATGGGGCGCACGGGGAGGAACACACTCCTACAACTATGGATACAAGCCAGGGACTTACTATGGAGGCAAAGGAGCTCTTAAAGAGGGAACATTTACACTGACTGAAGGAACAGTACTGAATATTGTGGTTGGACACAGAGGAGGAGATTCAGTGGAGGTGCAAGGAGGTCGGTACACTAGCAAGAGCGCAGCGGAACTGGGATTGTCAGTGGAAGACAATGCTGGAACAGGGGGAGGCGGAGGTAGTTTTGTTTATACTTCAAGTAACGTTCTTTTGCTGGCTGCCGGAGGGGGAGGGGGTGCGTCTGCAGGATATAATGGGGTGGATGGTCATGCCGGTACTAGTGGCACTAGTAGCGTAGGGATAGATTCTTCGAAAAGCAGAAGTGGGGGGACCGGGGGACAGCCAGGTCAGTGCAATAAGGTAGGTGGGAATTTCCATGGAGGGGTTGTTGCAGGTTGGTTGTCACAGGGTTGTGCTAGGGAAGGTTCATCGCATGGGGAGATGGGTGGGTCACGTGATCAGGGTTGGGTAGGAGGAAGAGCAGGGGGAATGAATAGTGGAAGCAATGGAGGACCACCCCCTGGAGCAGTGGGAGGATTTGGAGGTGGGGGTGGAGGATCTGAAGATAACGGTGCATCAGGGGGTGGGGGTGGGTACTCTGGAGGAGGAAGCGGCACTCACGCAAATCAAGCCGGAGGGGGAGGGGGCTCGTATTGTAGTGGTTCGAGCTGTTCGGGTTTGTCTGGCAGCAACTCCAACGATGATGGCATGGTGCAAATAATTGAATTATCTGACTAAGGGGAAAATTGTCTATACTTTGTTACTGTGTTTGGCGTCTTTTTTTTCATTTGCATGCGACATTTAACATTTAAAGTAAGCTATCTAACAATCACGGATATAGGGAGATTCCTTTCTTTCTGCAGACTTTATGTTTTCATGGTTTTATAAGATTATAGATTGACGTTTGCTGTAACCGTAACTTAATTTAGGGAGATGTGcaaagacaacgtcaacgacagagagaacgtTacttccaagtcatctagcttgcacaatgcgtaactagccagggataaaattggcatgagaagattgaaggaaaaaaaaacaaaagattttgttcgtccacgactgtgaaataagccatttcacgtcattaaaagggcgagcgcgcttgtcgcaaaatgaacagacaatgaaatacgctcgtgaaaaacgtgcaaaactactgtttttcagttaaatatgcaagttgggacgttcttgttgctgtcgtcagcgtagtttcttaagttgccaaatAAATATGCACGGTCTCTGGCTTTTGTCTTCATTAACTAGCAAGGGATGAGAGAGCAGTCAtcaaatgctcatcgaaataccaga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96MS0	Roundabout homolog 3 OS=Homo sapiens OX=9606 GN=ROBO3 PE=1 SV=2
Q9Z2I4	Roundabout homolog 3 OS=Mus musculus OX=10090 GN=Robo3 PE=1 SV=3
Q9NR99	Matrix-remodeling-associated protein 5 OS=Homo sapiens OX=9606 GN=MXRA5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000896 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12810 all species →	Gly_rich	Glycine rich protein	Family	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050958 all species →	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080 all species →	CONTACTIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046 all species →	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0050808 all species →	Biological Process	synapse organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s1507.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.