Gene detail

Detailed information of amic_s1802.g1.t2 in Acropora microphthalma

Genomic Location: sc0001802_pilon:1...20985
NR annotation: XP_029209648.1, electroneutral sodium bicarbonate exchanger 1-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DEU9	RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis OX=8364 GN=ctr9 PE=2 SV=1
Q62018	RNA polymerase-associated protein CTR9 homolog OS=Mus musculus OX=10090 GN=Ctr9 PE=1 SV=2
Q6PD62	RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens OX=9606 GN=CTR9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003442 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan
IPR031101 all species →	Family	RNA polymerase-associated protein Ctr9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14027 all species →	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593 all species →	Cellular Component	Cdc73/Paf1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s1802.g1.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.