Detailed information of amic_s2124.g1.t1 in Acropora microphthalma

Genomic Location: sc0002124_pilon:1...4114
NR annotation: XP_044175765.1, hemicentin-1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NDA2Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4
Q6PDN3Myosin light chain kinase, smooth muscle OS=Mus musculus OX=10090 GN=Mylk PE=1 SV=3
Q810U3Neurofascin OS=Mus musculus OX=10090 GN=Nfasc PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002839 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF19030
all species →		TSP1_ADAMTSThrombospondin type 1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR036383
all species →		Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884
all species →		RepeatThrombospondin type-1 (TSP1) repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10075
all species →		BASIGIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0007411
all species →		Biological Processaxon guidanceInterproscan
GO:0030424
all species →		Cellular ComponentaxonInterproscan
GO:0070593
all species →		Biological Processdendrite self-avoidanceInterproscan
GO:0098632
all species →		Molecular Functioncell-cell adhesion mediator activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s2124.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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