Detailed information of amic_s2297.g1.t1 in Acropora microphthalma

Genomic Location: sc0002297_pilon:1...3564
NR annotation: XP_015754946.1, PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2KHP8S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Xenopus laevis OX=8355 GN=tyw1 PE=2 SV=1
Q8BJM7S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Mus musculus OX=10090 GN=Tyw1 PE=1 SV=1
Q9NV66S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Homo sapiens OX=9606 GN=TYW1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004277 (this species only)

 Pfam domain
No Pfam domain signature was detected for amic_s2297.g1.t1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR013785
all species →		Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR007197
all species →		DomainRadical SAMInterproscan
IPR034556
all species →		FamilyS-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13930
all species →		S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0051536
all species →		Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0031591
all species →		Biological Processwybutosine biosynthetic processInterproscan
GO:0051539
all species →		Molecular Function4 iron, 4 sulfur cluster bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s2297.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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