Detailed information of amic_s2375.g1.t1 in Acropora microphthalma

Genomic Location: sc0002375_pilon:3...3413
NR annotation: XP_044168868.1, acylglycerol kinase, mitochondrial-like isoform X3 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q53H12Acylglycerol kinase, mitochondrial OS=Homo sapiens OX=9606 GN=AGK PE=1 SV=2
Q9ESW4Acylglycerol kinase, mitochondrial OS=Mus musculus OX=10090 GN=Agk PE=1 SV=1
Q5RED7Acylglycerol kinase, mitochondrial OS=Pongo abelii OX=9601 GN=AGK PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005637 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00781
all species →		DAGK_catDiacylglycerol kinase catalytic domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017438
all species →		Homologous_superfamilyInorganic polyphosphate/ATP-NAD kinase, N-terminalInterproscan
IPR016064
all species →		Homologous_superfamilyNAD kinase/diacylglycerol kinase-like domain superfamilyInterproscan
IPR001206
all species →		DomainDiacylglycerol kinase, catalytic domainInterproscan
IPR050187
all species →		FamilyLipid Phosphate Formation and RegulationInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12358
all species →		SPHINGOSINE KINASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016301
all species →		Molecular Functionkinase activityInterproscan
GO:0001727
all species →		Molecular Functionlipid kinase activityInterproscan
GO:0001729
all species →		Molecular Functionceramide kinase activityInterproscan
GO:0004143
all species →		Molecular FunctionATP-dependent diacylglycerol kinase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006665
all species →		Biological Processsphingolipid metabolic processInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0016310
all species →		Biological ProcessphosphorylationInterproscan
GO:0017050
all species →		Molecular FunctionD-erythro-sphingosine kinase activityInterproscan
GO:0043231
all species →		Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0046512
all species →		Biological Processsphingosine biosynthetic processInterproscan
GO:0046513
all species →		Biological Processceramide biosynthetic processInterproscan
GO:0047620
all species →		Molecular Functionacylglycerol kinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s2375.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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