Detailed information of amic_s4445.g1.t1 in Acropora microphthalma

Genomic Location: sc0004445_pilon:1...1945
NR annotation: KAJ7382306.1, Splicing factor U2AF 26 kDa subunit [Desmophyllum pertusum]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q29350Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa OX=9823 GN=U2AF1 PE=2 SV=3
Q3T127Splicing factor U2AF 26 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1L4 PE=2 SV=1
Q8BGJ9Splicing factor U2AF 26 kDa subunit OS=Mus musculus OX=10090 GN=U2af1l4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001476 (this species only)
Transcription factor familyzf-CCCH · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00642
all species →		zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan
IPR009145
all species →		FamilyU2 auxiliary factor small subunitInterproscan
IPR036855
all species →		Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12620
all species →		U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005681
all species →		Cellular Componentspliceosomal complexInterproscan
GO:0030628
all species →		Molecular Functionpre-mRNA 3'-splice site bindingInterproscan
GO:0089701
all species →		Cellular ComponentU2AF complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s4445.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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