Genomic Location: sc0000003_pilon:591593...601620
NR annotation: XP_015777941.1, PREDICTED: non-POU domain-containing octamer-binding protein-like [Acropora digitifera]
| CDS | |||||
| amur_s0003.g31.t1 | |||||
| Transcript |
| amur_s0003.g31.t1 |
| Protein |
| amur_s0003.g31.t1 |
| Uniprot term | Description |
|---|---|
| Q5ZK88 | Paraspeckle component 1 OS=Gallus gallus OX=9031 GN=PSPC1 PE=2 SV=1 |
| Q1LZD9 | Paraspeckle component 1 OS=Bos taurus OX=9913 GN=PSPC1 PE=2 SV=1 |
| Q4KLH4 | Paraspeckle component 1 OS=Rattus norvegicus OX=10116 GN=Pspc1 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF08075 | NOPS | NOPS (NUC059) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR012975 | Domain | NOPS | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23189 | RNA RECOGNITION MOTIF-CONTAINING | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K13219 | SFPQ, PSF; splicing factor, proline- and glutamine-rich | - | Spliceosome | ko03041 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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