Gene detail

Detailed information of amur_s0014.g83.t4 in Acropora muricata

Genomic Location: sc0000014_pilon:1073637...1087965
NR annotation: XP_044172961.1, neurogenic locus notch homolog protein 2-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amur_s0014.g83.t4

ATGAATTTGACATCTTACATCTTGGTCTTGATTCTGGTGTTCACTTTGGTTCTTACACATGAGGCAAATGGTCTAAAAAATTGTTCACTCAAAGTCAAAGCACATGGCTGTTTCGAAGACAAGCAGTCGCGAGTTCTTAAACATCTCATCCTCAACAGACGAGGCGCCGTAAATTGGACCCACTATGACAACTTCCTTGAGAGATTTGTCTGTGATTGTGCGAAAGTAGCAGAAAAGAAAGGATTCAAAGTGTTTGGTATTCAATTTTACGCCGAATGTTGGGGAAACAGGACTTTCACGAAGGAATCCCTGCCCCAAGAGAAACCAATGGATTGTCTGAGTGGAGATCTATCCACGACATGTCCTAGTACAGGCCCCGACAGGGTATGCACTGGAAAAGTCTGGAGAAACTTTGTGTTTTCTTTAGAGAAGCCTAATGCATGTACCAGCAAGCCTTGCAAGAATGGTGGGAGCTGTGAAGTGAGTGGGCAAGACAGTTTCACTTGCAAATGTAGCAAGGGATTTCACGGGAAAAACTGTGATAAAGTGGATGCGTGCGATAGTCAACCTTGTCACCACGGAGCATCTTGTAAGATAACTGGAAATAACACTTATGAATGTCAATGTTCTGCAAGATATTTTGGATCCAACTGTGAAAACGTGGATGCTTGCAGTAGACTTCCCTGTAAGAACGGAGCAACATGCAGTAGAACTGGAAATAACACGTATAGCTGTAAATGTAGCATGGGATATTTTGGACAAAATTGCAGTGAAGTGAATCGATGTATAATCAGCCCTCCTTGCCAGAACGGAGGCACCTGTACCAGCACTGGAAACAGCAGCTACACGTGTCGCTGTCCCGAGGGATTTTATGGATTTAACTGCGAGAAAGTGGATGCTTGCAGTAGACTTCCCTGTAAGAACGGAGCAACATGCAGTAGAACTGGAAGTAACACATATAGCTGTAAATGTATCATGGGTTATTTTGGACAAAATTGCAGTGAAGTGAATCAATGTATAATCAGCTCGCCTTGCCAGAACGGAGGCACCTGTACCAGCACTGGAAACAGCAGCTACACGTGTCGCTGTTCCGAGGGATTTTATGGATTCAACTGCGAGAAAGTGAATCGATGTATAATCAGCCCTCCTTGCCAGAACGGAGGCACCTGTACCAGCACTGGAAACAGCAGCTACACGTGTCGCTGTCCCGAGGGATTTTATGGATTCAACTGCGAGAAAATGGATGCTTGCAGTAGACTTCCCTGTAAGAACGGAGCAACATGCAGTAGAACTGGAAATAACACATATAGCTGTAAATGTATCATGGGATATTCTGGACAAAATTGCAGTGAAGTGAATCGATGTATAATCAGCCCTCCTTGCCTGAACGGAGGCACCTGTACCAGCACTGGAAACAGCAGCTACACGTGTGGCTGTCCCGAGGGATTTTATGGTTTCAACTGCGAGAAAGATTGCTCTTTTCCGATGGATATTGCCCTAGCCATTGACTCATCCGGGAGTGTTGGACGTCGTTCCTTCCAGTTGGTGAAAGCGTTCCTGAAGGTGTTCACGCATCATTTTGAAGTGACTAACACGACTCACTTTGCATGCCTCCACTACGATCACAGAGTTTACAAAAATTTCAAATTCAAGGACACACAGTATCATAACCACCCCAGTCTTGATGCAAAGATACAAAGCATGCGGTATCTCGGGGGAGCCACTCTTACAGATCAAGCCTTGACCGTAGCGAAAACGTTCTTCTTCAGACGAAATGGAGCGCGCAACAAAAGAAAAGTTAAACGCGCCGTGGTGCTCATGACGGACGGTAAAACGTACTACGGTGTGCCAAGCCTTGTTCACCCTACATACGAGTTGAAGGAAATTATGTCTGCAAAAATTGTGGCAATTGGGGTCGGCCCGTATGTGAGCTTGAAGGAACTACAAGTTATGGCTGATGGACACTACGTGCTAGTGGAGGACTTTAACAAACTTGCCAAAGCCATTACTGATGTCATGGATCTTGTGTGTCAATGA

Transcript

amur_s0014.g83.t4

CAAAAATACTGCCACGATTCAGTGAAATTGGTGATTTGAGATAAGAAACGTTTTACCATGAATTTGACATCTTACATCTTGGTCTTGATTCTGGTGTTCACTTTGGTTCTTACACATGAGGCAAATGGTCTAAAAAATTGTTCACTCAAAGTCAAAGCACATGGCTGTTTCGAAGACAAGCAGTCGCGAGTTCTTAAACATCTCATCCTCAACAGACGAGGCGCCGTAAATTGGACCCACTATGACAACTTCCTTGAGAGATTTGTCTGTGATTGTGCGAAAGTAGCAGAAAAGAAAGGATTCAAAGTGTTTGGTATTCAATTTTACGCCGAATGTTGGGGAAACAGGACTTTCACGAAGGAATCCCTGCCCCAAGAGAAACCAATGGATTGTCTGAGTGGAGATCTATCCACGACATGTCCTAGTACAGGCCCCGACAGGGTATGCACTGGAAAAGTCTGGAGAAACTTTGTGTTTTCTTTAGAGAAGCCTAATGCATGTACCAGCAAGCCTTGCAAGAATGGTGGGAGCTGTGAAGTGAGTGGGCAAGACAGTTTCACTTGCAAATGTAGCAAGGGATTTCACGGGAAAAACTGTGATAAAGTGGATGCGTGCGATAGTCAACCTTGTCACCACGGAGCATCTTGTAAGATAACTGGAAATAACACTTATGAATGTCAATGTTCTGCAAGATATTTTGGATCCAACTGTGAAAACGTGGATGCTTGCAGTAGACTTCCCTGTAAGAACGGAGCAACATGCAGTAGAACTGGAAATAACACGTATAGCTGTAAATGTAGCATGGGATATTTTGGACAAAATTGCAGTGAAGTGAATCGATGTATAATCAGCCCTCCTTGCCAGAACGGAGGCACCTGTACCAGCACTGGAAACAGCAGCTACACGTGTCGCTGTCCCGAGGGATTTTATGGATTTAACTGCGAGAAAGTGGATGCTTGCAGTAGACTTCCCTGTAAGAACGGAGCAACATGCAGTAGAACTGGAAGTAACACATATAGCTGTAAATGTATCATGGGTTATTTTGGACAAAATTGCAGTGAAGTGAATCAATGTATAATCAGCTCGCCTTGCCAGAACGGAGGCACCTGTACCAGCACTGGAAACAGCAGCTACACGTGTCGCTGTTCCGAGGGATTTTATGGATTCAACTGCGAGAAAGTGAATCGATGTATAATCAGCCCTCCTTGCCAGAACGGAGGCACCTGTACCAGCACTGGAAACAGCAGCTACACGTGTCGCTGTCCCGAGGGATTTTATGGATTCAACTGCGAGAAAATGGATGCTTGCAGTAGACTTCCCTGTAAGAACGGAGCAACATGCAGTAGAACTGGAAATAACACATATAGCTGTAAATGTATCATGGGATATTCTGGACAAAATTGCAGTGAAGTGAATCGATGTATAATCAGCCCTCCTTGCCTGAACGGAGGCACCTGTACCAGCACTGGAAACAGCAGCTACACGTGTGGCTGTCCCGAGGGATTTTATGGTTTCAACTGCGAGAAAGATTGCTCTTTTCCGATGGATATTGCCCTAGCCATTGACTCATCCGGGAGTGTTGGACGTCGTTCCTTCCAGTTGGTGAAAGCGTTCCTGAAGGTGTTCACGCATCATTTTGAAGTGACTAACACGACTCACTTTGCATGCCTCCACTACGATCACAGAGTTTACAAAAATTTCAAATTCAAGGACACACAGTATCATAACCACCCCAGTCTTGATGCAAAGATACAAAGCATGCGGTATCTCGGGGGAGCCACTCTTACAGATCAAGCCTTGACCGTAGCGAAAACGTTCTTCTTCAGACGAAATGGAGCGCGCAACAAAAGAAAAGTTAAACGCGCCGTGGTGCTCATGACGGACGGTAAAACGTACTACGGTGTGCCAAGCCTTGTTCACCCTACATACGAGTTGAAGGAAATTATGTCTGCAAAAATTGTGGCAATTGGGGTCGGCCCGTATGTGAGCTTGAAGGAACTACAAGTTATGGCTGATGGACACTACGTGCTAGTGGAGGACTTTAACAAACTTGCCAAAGCCATTACTGATGTCATGGATCTTGTGTGTCAATGAAAATAGAAACAAAGAATAAAGGTAGTAAAAAGTATGAAATGCAGCGCTGATGCCCAAAACAAGTTGTTTTTTTTTTTCAGTGATATATATCAAAATTTAAAACCACGTAATGTGACGCTTGCATTAAAGGGTAGTTGACTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005112	Molecular Function	Notch binding	Interproscan