Gene detail

Detailed information of amur_s0026.g34.t1 in Acropora muricata

Genomic Location: sc0000026_pilon:785820...813754
NR annotation: XP_044171786.1, uncharacterized protein LOC114950291 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amur_s0026.g34.t1

atgctgaaattggtgatactgagaagtgtccagtcgtaccggggctttcaactattttcaaataatcagagagaattccgaattttGAATTCGATTTTGAAATCGCAGGGCGGAGAAGGACGAGCCTATGGAAATCTCGGTAATGCTTACCAGTCACTGGGTGACTATCGAAAAGCCATTGCGTATCATGAAAAATATTTAAAAATTGCAATAGAAATTGGTGATCAGGGCGGAGAAGGAGGAGCCTATGGAAATCTCGGTAAAGCTTACCAGTCACTGGGTGACTATCGAAAAGCTATTGAGTATCATGAAAAACATTTAAAAATTGCAATAGAAATTGGTGATCGGGGAGGAGAAGGAGGAGCCTATGGAAGGCTGGGTAATGCTTACCAGGCACTGGGTGACTATCGAAAAGCCATTGAGTATCATGAAAAACATTTAAAAATTGCAACAGAATTTGGTGATCAGGCCGGAGAAGGAACAGCTTATCACAACATTGGAATAGTATTCCTTTTTCTTGAAGAAACTGAAAACGCTGTGGGTAATTTTGTTTCCGCTGTGGATGTCTTCAGTTCTTTGAGATCTCAATTGAAGTCTCAAGATAACTGGAAAATAAACTTTCGTGAGGTGCACGAAAAGGCGTACATTGCTTTGTGGGTTTCTTTGCTAAGAATTAAAAAGATCGATGAAGCTTTGTTTGCGGCTGAACAAGGACGAGCGCAGACTTTGTCTGACAATTTGTTGATTCAATATAAACTTGATGCATCCTTATCACctgccacaattgacaccaaagagacaatatctcgcctcctcacaaagatttcttcacctactctttttctcgcgactaaaGactttacgaccaacatctggtttCtgagaaagggaaagaaagttagatttcggaacagcaggctggagggtgacaaaacaGagaaggatcctttactcgccttaatgaaatcatctttggaaaaaatcggagccgaagatacaaaaagacgtgaagatcgcacatttgatgaaattgacaacgaatcctcgtttagcataaaagtgcgaggtgaaggagttaaaaaaccaccatcgccgcctttagatgatccctttaagccattttatgatgcagttattgatccaattcttgacatgcttgagcctcaagacgacgatgtacccgagggacatcacaagaagaaggaggcgcttttggttggaaatccCtgcttaaaagagttgaagaaacccttagacgacttaccatgtgctcaGGAAGAAGTAGAAATGATTGCATCAGTTCTCAAGACCACACCTCTGACAGGAATACATGCAACAAAAGCTGAAGTGATCATACGGATGTCTTCAGTTGCCTTAATTCATATTGCTGCCCACGGAAACGAGCGCACTGGGGAAATTGCTTTGTCTCCAAACCCTGGATGGTCTTCAAAGTTCCCTCAAAGAAAGGATTACATTTTAAAAATGTCCGATGTGCATGCTGCCAATCTTCGAGCTCGTCTTGTGGTGCTAAGTTGCTGTCACAGTGGACGAGGCAGAGTCTTGAAGGGTGAGGGTGTGGTCGGTATCGCACGTGCCTTTTTGGCAGGTGGTGCTCGTTCTGTGTCGGTGGCACTGTGGGCAAAAGATGACGAATTTACCATGaccCtcaaagttccaggctctatttattgtctgcgtgcttgtgatgaTgacattcgctgccaaagcatcaatcacgtggtccatggagaaatttgcgagttgaacaaccgtacaaaagaggcaaggcccgaagattttaccgacgatcatactaaagtttacatgaagaagttcaggaaaagagctgccattggttcaatacctgaagtgcctgctgagtcttgcaacgaagtaaaaatgagtgaaaaggggcgtgacggcaaatactggctgtcgtctatcattccaggaacacccgtatttgcttactgtgacatgaagaccggggacgctgatgaatgcaccgcttcaccacccgtttgtcacgtgaaagcgctatgcaccaatactaatggctcgcaccgctgtacttgcaagcgtgggtacactggtaacgggacaacatgcaaagacattgatgaatgcacagcatcgacacccgtctgtggtatagatttcaaatgcttcaatacactgggctcctaccgttgccaatacaactccagcagagaaggctgtcagggtatacttcttgatggacagcagaaaattttcaatcttactgacggattatacacggtatgggttaactccacttcaattcaggcttattgtgatatgacaagttctggccaagcttggactctcattgctcggttctcaaacaatgatgccaaaaattggatggaagatagtggagagtggtggtacgataagagtgtaggcgttggagaaataacggacccatcagtcaacgcagacatgctctcgccgtcattctggttggtcaggggtcgcgaattcaagatcacgcgcagtgatgactttcagcacaccgcattgttgcagaccagtggtgaatgcctgggtggacagacattccgggcgaaaatcaccagttatggtaacttcaGaaatggtagagtttgggcaagcgatgActgccaggcaaattgtactgttcaatatggaggtcagtttcaagcaactgatggattcggacaagctacatgcgatggatcgattcaaaaggcaacacaagtaggcttctggtgcgactggagacatggtgatggagcggtgttgatgattggtggaggagggaaagattgtcatcgcgcagatcacgggatcggaataactgaaacgaacagagcttccttcttggataggaagggtacgggagaacaagattttggcaacgaggcgtggcatagagcaacaatcactaagacctactctttgaacctgtgggtaaattag

Transcript

amur_s0026.g34.t1

tattatacatcaaacacaattgcttggagagattttagatttcttaggaatagggtcatttttcaatgctgaaattggtgatactgagaagtgtccagtcgtaccggggctttcaactattttcaaataatcagagagaattccgaattttGAATTCGATTTTGAAATCGCAGGGCGGAGAAGGACGAGCCTATGGAAATCTCGGTAATGCTTACCAGTCACTGGGTGACTATCGAAAAGCCATTGCGTATCATGAAAAATATTTAAAAATTGCAATAGAAATTGGTGATCAGGGCGGAGAAGGAGGAGCCTATGGAAATCTCGGTAAAGCTTACCAGTCACTGGGTGACTATCGAAAAGCTATTGAGTATCATGAAAAACATTTAAAAATTGCAATAGAAATTGGTGATCGGGGAGGAGAAGGAGGAGCCTATGGAAGGCTGGGTAATGCTTACCAGGCACTGGGTGACTATCGAAAAGCCATTGAGTATCATGAAAAACATTTAAAAATTGCAACAGAATTTGGTGATCAGGCCGGAGAAGGAACAGCTTATCACAACATTGGAATAGTATTCCTTTTTCTTGAAGAAACTGAAAACGCTGTGGGTAATTTTGTTTCCGCTGTGGATGTCTTCAGTTCTTTGAGATCTCAATTGAAGTCTCAAGATAACTGGAAAATAAACTTTCGTGAGGTGCACGAAAAGGCGTACATTGCTTTGTGGGTTTCTTTGCTAAGAATTAAAAAGATCGATGAAGCTTTGTTTGCGGCTGAACAAGGACGAGCGCAGACTTTGTCTGACAATTTGTTGATTCAATATAAACTTGATGCATCCTTATCACctgccacaattgacaccaaagagacaatatctcgcctcctcacaaagatttcttcacctactctttttctcgcgactaaaGactttacgaccaacatctggtttCtgagaaagggaaagaaagttagatttcggaacagcaggctggagggtgacaaaacaGagaaggatcctttactcgccttaatgaaatcatctttggaaaaaatcggagccgaagatacaaaaagacgtgaagatcgcacatttgatgaaattgacaacgaatcctcgtttagcataaaagtgcgaggtgaaggagttaaaaaaccaccatcgccgcctttagatgatccctttaagccattttatgatgcagttattgatccaattcttgacatgcttgagcctcaagacgacgatgtacccgagggacatcacaagaagaaggaggcgcttttggttggaaatccCtgcttaaaagagttgaagaaacccttagacgacttaccatgtgctcaGGAAGAAGTAGAAATGATTGCATCAGTTCTCAAGACCACACCTCTGACAGGAATACATGCAACAAAAGCTGAAGTGATCATACGGATGTCTTCAGTTGCCTTAATTCATATTGCTGCCCACGGAAACGAGCGCACTGGGGAAATTGCTTTGTCTCCAAACCCTGGATGGTCTTCAAAGTTCCCTCAAAGAAAGGATTACATTTTAAAAATGTCCGATGTGCATGCTGCCAATCTTCGAGCTCGTCTTGTGGTGCTAAGTTGCTGTCACAGTGGACGAGGCAGAGTCTTGAAGGGTGAGGGTGTGGTCGGTATCGCACGTGCCTTTTTGGCAGGTGGTGCTCGTTCTGTGTCGGTGGCACTGTGGGCAAAAGATGACGAATTTACCATGaccCtcaaagttccaggctctatttattgtctgcgtgcttgtgatgaTgacattcgctgccaaagcatcaatcacgtggtccatggagaaatttgcgagttgaacaaccgtacaaaagaggcaaggcccgaagattttaccgacgatcatactaaagtttacatgaagaagttcaggaaaagagctgccattggttcaatacctgaagtgcctgctgagtcttgcaacgaagtaaaaatgagtgaaaaggggcgtgacggcaaatactggctgtcgtctatcattccaggaacacccgtatttgcttactgtgacatgaagaccggggacgctgatgaatgcaccgcttcaccacccgtttgtcacgtgaaagcgctatgcaccaatactaatggctcgcaccgctgtacttgcaagcgtgggtacactggtaacgggacaacatgcaaagacattgatgaatgcacagcatcgacacccgtctgtggtatagatttcaaatgcttcaatacactgggctcctaccgttgccaatacaactccagcagagaaggctgtcagggtatacttcttgatggacagcagaaaattttcaatcttactgacggattatacacggtatgggttaactccacttcaattcaggcttattgtgatatgacaagttctggccaagcttggactctcattgctcggttctcaaacaatgatgccaaaaattggatggaagatagtggagagtggtggtacgataagagtgtaggcgttggagaaataacggacccatcagtcaacgcagacatgctctcgccgtcattctggttggtcaggggtcgcgaattcaagatcacgcgcagtgatgactttcagcacaccgcattgttgcagaccagtggtgaatgcctgggtggacagacattccgggcgaaaatcaccagttatggtaacttcaGaaatggtagagtttgggcaagcgatgActgccaggcaaattgtactgttcaatatggaggtcagtttcaagcaactgatggattcggacaagctacatgcgatggatcgattcaaaaggcaacacaagtaggcttctggtgcgactggagacatggtgatggagcggtgttgatgattggtggaggagggaaagattgtcatcgcgcagatcacgggatcggaataactgaaacgaacagagcttccttcttggataggaagggtacgggagaacaagattttggcaacgaggcgtggcatagagcaacaatcactaagacctactctttgaacctgtgggtaaattagttatGAAAGACTCACTTCTGCTGTCGATAAAACTGTCTTAAATCGATCCAATAAGAAAGCAATATGATGAATCGACGTGTTTATTCGATATCGATATCCGCAACCGTATGGTTTTCGCAGGTATCGATGTCTTCAGACGAAATTCCGATAAACGCTAAGAGGAAAAGTACGTGTAAAATTAAGGAGCGTTTCAAACTTACTCCTTTCCTTGGCAAGTTGTGAATAAAGTGGTGTGATATGAACTCACTCTCCATCACTTTGTGGTGGTTAAAAAACTTACAACTCGCGTTCTGGATTTCAAGTATGTAAACAATTTTTGATTTGAGATTATTAAAAACTATACGTTTCTCAATGTATCACACTGTCCACACAACCAACCTCGTTCCCAGGGTCTCTCTGAAGAACGAGGTTGCCACACAACCAGTACAGCATAACAAAGCCAGCAAAGAAATGAAAAGCGATGCTCTGTTGCAAAGGCTCTTAACTGGCCAATCATAACGAACACAGTGAAGAAGGCAGTGAGGTTATTTGGTGGAtaataacatgagtgacaagttactccttgattttgacgtgaaatttcagcgttaattcataatttcacaagtgaaatataaaaattgccatggcaacttttcctacagtgccaaaatggcgcccaggttaaaaaatgctacagattagtatgggtaatcaaatggtgacgagtataaataagagagtaatttcccttgcgttttgtccaaaatcgagtaatttccctggcctatgagtttgggaaattatttgattttggacaaaacacaagtgaaaatattctctaatttcacctgtataccatttgactagctatttatatcatgggtgactgacaaattacgctcacaaATATCtcttattaactgacttcgagggctgtactgaaagttacggaccgcgtattttccacttc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF12770	CHAT	CHAT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR024983	Domain	CHAT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan