Gene detail

Detailed information of amur_s0034.g43.t1 in Acropora muricata

Genomic Location: sc0000034_pilon:989181...1011437
NR annotation: XP_029188290.2, uncharacterized protein LOC114955591 isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amur_s0034.g43.t1

CTGTGTTCAACTCTGCGTTAAAAGCTTCGTCCAGGTGGCAAGTCCTTCATCATCGCGATCGGAGAACTCAAGAGTGTTGTGAAACAAGATCAACGGATATTGAGAGCTGGTTTTTCCGAAAGAGTGCCCTTATGCTTTCTAAACTATCTTGGGTTTTCTACACTACTCTGATTTTAATCACGTTACTTCGGAAAAACTTTATTGTTGACTCGAAACATGTGGGATTGCAATCAAAATGTAATGTCCAGGCGATTTCATGCTCTTGCAAAGAGAATTACGGCTTGGAAGAGTACGTGACTGTGGAATTATGCCTGAATCACACCAAGTCTCCTTGTCAGGTCAAAGCAGTGATGGATCAGTGTAGGAAACAAGCCTTTTCAAGCCATGCAAGACAGAAACGCAATATGCAAGACTTAAAATGCCAAATTGGAACTTTCACAAATGGTGCTTCTAAATCCCCATCTGAAGCTATTCTTCTGGCTGCAACAAATGGCCCTACAAAGATTGTCCGTGAAGGGAATGATGCCATATTTCATTGTATAGTTCATTCGTCTCTCCCAGCAAACATAACATGGTTTTATAATGGCAAGCCACTGATGAACGACAGTCGGCATCGATACTCTCAATGCAACACAGTTTTCCAGCTTCGAAGAGTGTCATACAAAGATGCAGGGAATTATAGCTGTGTTGTCAACAGTGCACTTGGAAAAGCAACAGCTTCCTCTCGACTGTCTGTTATTCCGAGAGAGAAAAAACCAATAATACTTTTCATGGGGCTGGAGGAAGGCAAGGATTCTAACACTGCAATTGTTGGAAGCAATGTGAATTTAACATGTATAATTCACAATCCTCAAGTACAGAATACATTTGAAAAAGATGGAAGGGACTTAGACGAGGACAGAGACTACACTTACCATAGCTTTGGAGTAGGCAAAATTAAACGCTCTGTTCTAGAAATAAATAATGTTGCTTTGGAAGACGCGGGAAACTACACGTGCGTTGCATTTCTGGAAGGTGCAACTACAAGATCCACTTTTTACCTCAAAGTTGAACCGATTTTGCCTGATGACTCTTCCACAAAGATCTTAGCACTTGTGTTTGGGGGTTTTGGTGTGATGATTGTTGTGTGCTTAGCATTGATTTGCCTTTGTAAGAGCAACCTGGAGACTAGTGTTCCATTATCACCAACAGAATTAGTAGTCACGCAGAGTGAGCCGAACGGCGTGTGCGTAGACCAAAGAAACGGCAATCATGAAGAAATAGAGAAAAGGCCTCCTGAGAAAGATTACGAAGCTAGATACGACGTCTTCATTTGCTACAGCTACAAAGATATTGAGTGGGTCAAAGAACTCCTTGCAGAGCTAGAAAAGCTAGATCTTGTTTGTTGCATCGACTTCAGAGATTTTGTTCCTGGTGCTACTATCGTTGAAAACATCTCAGAAGCAATTTATTACAGTGCAAAAACCATCGCTGTGCTGTCACCGGATTTCGTGAACAGCGAGTGGTGCAACCGTGAGCTCCAGCAAGCACTGATGAGAATACGCTTGCATCAAGTTGTACCGATTGTTTACAGGAGCTGTGTTGTTCCTTTGACTTTACAAGACAGGACTTATCTTGACTGGGAAAATTGCCTTGTGAAACCGTTTTTCTGGGAACAACTTGAAAAAGCGCTGAAGCGACCATGCGATGGATGGATTGGTCAGTAAGCAACGACCAGCGTTGCTGATGTTTATTGATCCTCTACGTACTGTTCTTTGAAGGGCAGCATCGCTTTCTCGTAGTGTGTTTTTGCAACGGATAGCTGGTGTTCTCTTCTACAGATGCCGCGGTTTTTGCCATCAGCGCCGATAATACTGACTTCTAGCTGGCTCTAAACCAGGAAGCTTGCGAATGATGCACTTACCTTCGTCTCAGTTGTGCATACAGTCTTACGCAATGGAGTAATTTATACAACATGTTTTTCCACTCAGTTTTTGCTCCACCCAACTCTAGTAGCGCTGCTATATATCTATCTATATATCGCGTTACATCTAGTAACATTCTTAAACAGCTCCAATCGCTTGATGTGAACAAAGCCTCCCTTGGTCTTCCAACCAATGGTAAAGACTTGAAAGTGGGACAGGACGTAAGGCAGCGTTGGTGAGGTCCCCTTGTGGTAGCGCCTGCGCTTTGAGATCTTTTGATCTGAAAAACCAAAAAAAAAAACCTTATTTGAAACAATAACTTATTGCTTTGATGATTATTTCGTCATGATCCTGTCGTTTTCATTTTATTCAATGTCGGCGAAGTGTCTTATGTTTGCTGGGTTGGCAAAAAAAAGTTTTCAAGTGACGAGAGAATGATAGATTCCTTCGTCGTCgttttccagaaacgacacaaatgtaattaagagcgtgtcgaaccttcagccggattattttctcttttaaccagtcatgttattgacttgtgatgtcgccgacgtcgGAAAGAAGGGTGCTCGAAATTGTTTGGACTCAGTAACAGCATTTCATTGACTATCCTAGGCGAACAGGAAAGATCCAGTTCTTCTCGCGGCAGGAAAAGTGTGGTAAAGTCGCACTGAACGTTTGAACAATTCTGGGCACATTCCCGCCACCGTCTCTATATTCCTGTGGGTCGTTTCTGGTCCACATTGTTCTTCCCATCGTAATTATTCTTATCATCAACGCCATTTGCGCGACTTCTACTTGGAGGAATAACCTCATTAGCGTATGAAATATAACTGCTGAAAAATGGAAAATTGTAGAAGGCGAAAAACAAAGTCAAAGTAGGAAGTGAACTTCAAAAAGTCAAAAATATTTGTCTTAAGAACATTTTGGACCATGTTCTTTTTACAGAATGACCAATTTAGACACTTAAGAAAGTCTTTTCATTTTCCTAAAATCGAGTTTTTTTTTTGTATAGAAAAACTATGAAATGGTTGTACAGTCATTTTCCACTTTTTTTTTCCACTTCGAAGTTAAGCCAAAAAAAATAAGCCATTTTGGATCATTTTGCCTCACTACAGCCTTTACAAAATAGCCATTTCAGAATCTTCAAAATCTTGTCACTTTTAGATTACTAAGTATTTTTTGCAGCAGTTTTGTGAATACAGAATCTGCAATGTGCTTGTACAGTTTTTTTGTGTGTGGTTAGCCATGAAATAGACCACTTTGCACCATTCTGGCTTAATAGAGTCCTTGCAAAATGGCCATTTTAGACACTTCTCACAATCTGGTCATTCTTCGAATACTTAGTATTTTTTCGAGAAGTTTTGTGAATAAAGTACCTGCAATGTG

Protein

Uniprot

Uniprot term	Description
Q0ZUL9	Toll-like receptor 6 OS=Dasypus novemcinctus OX=9361 GN=TLR6 PE=2 SV=1
Q9Y2C9	Toll-like receptor 6 OS=Homo sapiens OX=9606 GN=TLR6 PE=1 SV=2
Q15399	Toll-like receptor 1 OS=Homo sapiens OX=9606 GN=TLR1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676	TIR_2	TIR domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05173	IL18R1, IL1RRP, CD218a; interleukin 18 receptor 1	-	CD molecules	ko04090	deepkoala