Gene detail

Detailed information of amur_s0036.g39.t1 in Acropora muricata

Genomic Location: sc0000036_pilon:700101...707123
NR annotation: XP_015754097.1, PREDICTED: homeobox protein ceh-38-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amur_s0036.g39.t1

CTCGCAATGATTCCACGTATTTCCCTATATGCCAAAAATATTGACCGAAGGTAACTTCCAGCGATGATTACCGGTGAAAATTCATCAGCAAATTCCGTCTCTACGCCGTCAAACTCGGCTGTCCAAATGCAGGAGTTGGATCCGTTAACTCTTGGTGCTTCTGAAGAAGTTAACACATCTTCTGTTTGCAGTGAAAGTAGAAAAAATTCCCACTCTTCCAAAAATATCGACGTCAGTGTTGAAACGTTTACTCCAGAGGTATTAGGCTTACGCAAGAAGTCCCCTTTGAATTCTTCTTTATATGATCTTACATTCAGCGAACACTCAAAGATGGAAAGCGAGATAAAAATTGGTGATGGTTTGAAAGGGAGCACTGATGGCTCAACGAGGGTTGAAAGTATGAGGGCTAAAACAAATGAAGCCAGACGCGATGAGGCAATCACAGAGACGTCTGGAGTGGTGACAACTGTTGTTTCAGAAGGCCTTTCGTTTGTGGAAAGTACACGAGGAATTGTTGTAGTGGAAGAAGTTGCTTTAGATCGAATTCATGAATTTATTTCTGGCAATGTGGCAAATCTGCAAAATTACAACTCTTGTAACAATACGGTCTATGAAGGAAAATCTGATGGACAAAAATCTGCGAGTGTGGATCGAAGATGTTCCCAGACAGTTAGGTCTACGGAAAATTCTGAAATTGGACGATCCTTGCAAGTAAGCTTGCCAAATATAGAAACTTTCGACGAGGATTCCTCGGATATATTTAGGAAAAAATTTGAAGATCTTGACACAAAAGAAATTGCCGAGGCTCTAACGAATGAACTAAAGAAATATTCAATTCCACAAGCTGTTTTTGCGCGTAAAGTTTTAAATCGATCTCAAGGAACATTGAGCGATGTTTTGAGAAAACCAAAACCTTGGAATGAACTCAGAGGAGGACGAGAAATATTTCGTAAAATGAAGGAATGGTTAGATTTACCAGAAGTCAAACGCATACCACAACTTAGGACAGAAGCTGCTTTAGAACTTGATGCAAAGGCAAGAAGAGCTGATCTGCATGGGCTCTACACTTACTTGTTAGCCGCACTAAGAAAAGACTTTAAAAGCAACAAAACCAAACTTAATTTTCATAACGCGATCAAAACAGTTGGATTAGAAAATTGGTTTTACGTACTGCGTTTTGGTGCATTTTAGATCTAATTTGTATTGGTTTTGTTTAATTTTTAATCGGCTTGCATTCAAATGCGGTTGGCAAAAAGTAAACAAGGCCAATCTGTGCTGCCGTTTTCATTGGGCAAGAAGTTTCAGAGGAGAGATGATACATGTAGCTTTGTTATTTGTACAACTTCTTTTTCTTCTGCTAAAAATAATCAGATATAATGTCTGATCACAGGTAAACGATGTGGACAACCATGAACAAGTTATGGTGGGCAGACTGACTCTGCCAATTGACCAACCGTTATTTGCAGCTCTGGGTATAAGCTAGCGAGTGTTTATTGAAACAGTCGTTGGAATGTTTGACGGTTCGACCCAATagactcttatcattcagcggccattttggatttaaaacgaggcaggacgggcataaacacgccatatttagaatggataatttatttgagaacattgtttatggccttcactcctcatttcaaatccaaaatggcgattgagtgTTAAGGGTCCACTGGAGCAATAGGCAGATGTTAATGACCTGAGCAAAGTTGTTTTTTTATTCCTTGGAGTATTTAGGATGACGTTTTAAACCAGATTACAGAATAACAGCAATTTTCATGGTTGATATTAACTAGCGCTTAGTGCCTCCCCGTCTGTTTGAACTATTGTTTGTTCGTATCTCTGACAAGTTTCATGGCGTGTTGCGTGTTGCCTCGATTTGCACAGGCTACAAATTGCAATAGCAACAGAAACGTAAGTTGGATTGCCAAGTGTTATTAAATGGTTGATTAATAGCCGTTTTCTTAGTATGGTTTTGATGAATAGATACTTAGGAAACAGCTTGGATTCAAATTCTTTAGTGAAGCCATAACTATACCACTTTCATCCTACTTAGTGCAGCCAACAAAGTGTGCGTTCCTCTTGCCTGCTCGCTTTAGAGCTTGCTACGTTTTTGAAATGAAGAATAGAATATCGAAACTCAA

Protein

Uniprot

Gene family

Uniprot term	Description
Q9UBC0	Hepatocyte nuclear factor 6 OS=Homo sapiens OX=9606 GN=ONECUT1 PE=1 SV=1
O08755	Hepatocyte nuclear factor 6 OS=Mus musculus OX=10090 GN=Onecut1 PE=1 SV=1
P70512	Hepatocyte nuclear factor 6 OS=Rattus norvegicus OX=10116 GN=Onecut1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	CUT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02376	CUT	CUT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003350	Domain	CUT domain	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR051649	Family	CUT Homeobox Domain-Containing Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14057	TRANSCRIPTION FACTOR ONECUT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08026	ONECUT1, HNF6; one cut domain, family member 1 (hepatocyte nuclear factor 6)	-	Transcription factors	ko03000	deepkoala