Gene detail

Detailed information of amur_s0052.g23.t1 in Acropora muricata

Genomic Location: sc0000052_pilon:423001...435425
NR annotation: XP_029210477.2, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amur_s0052.g23.t1

CGATAGCCTGTCTTCATACATTTTGCTGCCACTGTTTGGAGAGGCATGCACGAACAAGCGCTAGAAATGGAAAGTTTCGCTGTCCCGAATGTCAAGCAAAAATGACTCTCCCTGATGCAAATCGATTCGACAAACTACCCACAAGTTTCCATTACAATAGTTTGCTGAGTGTTCTGGGCGTCCGACAAGTCGGCGATGGAAGTGAGATCAATTGTGGCAATTGTAAGAAGACCAGTGTAGAAATAAGTTATTGCTTTGACTGCGAGAAGTTGATGTGCGGTGACTGTGAAAACGCTCATGAATTGTTGAAGAACATGGCCTTCCAAGGCCACAAGGTGACTCCAGTGAAGAAATTCCAAGATAAAGACTACGAAGCGATGATGAAGAGGCAGTCCTTCTGCTCTCAGCAATACCACGAACGAGAGCCAACAAGGTTTTACTGCACGGAATGCGAAATGTGCGTCTGTCAGATTTGCATCAACACCGTAAACTCCACGGAGTAGAACCACTTGAGAAGGCAGCAGACAATGCGAAAAGCGAAATTCTAACGCTAGCTGAGATTATGGAAGAAAGAATTACAACCTGCAATGCTTCAATTCGTCAGATTGAAGAAATGGAGGCAGAAATGGAGGCAAACATCGCTTCCTCAAAGCGTGAAGTTTCTCGAGCAGCAGATCAAATCGTGGCCAAGGCACGCGAACTTGAACGCGATAACATAACTGCCCTCGAAAACACGCGCCTTTTGAGCGCGCAGAAGTTTAACTCGGCAAAGCAGCAACTACAGTCTTTCGCCAAGCAATTCACTCAAGCGGTTGATTTCGCCCAGAAGATTGTTCAAATTAATTCTTGCTCAGATACTATACAAAACCACAAACAAATTGCGTCCCGTTTTAAAGACCTCGACAACATTCCAATCGAACCACTTCCGCCTCGTTCATCAGCGATGTTTGTCCAAACTTGTAATCCATCGAAGTTAGAACTTGGCTTCACGACAACAGCGGACGTCGATCCAAATAAATCTGCAGTCAACGGCCTGAACCAAGAATTTCAAGCTGGCGTAGAATGCACACTTGTGGTCCGTCCCAGAATTCATCCAGAAGAACGCGTGACTGAAGCCGTAAAAACCAAAATTTATGTCCAAGTGCTGATGGAACCTGTTGAAAAGGTTTCTAGTGTGGATGTTTTTGATCAAGGAGACGGAAGTTATCAAGTAAAATTTGTTGCCAAGGTTCCTGGTTGTTTGCAAGTCTCGGTAAAGATCAACAACAAGAAACTTGCAAAGAGTCCCTTTACTGTCCATGTGAAGGAACGACGTATTAAGGTTGTTGGCAAGTTGGAGTTTTTGAGAAAAGTTCCGAAAGATCCTTCAGCGATTGCCGTAAATAGTGAAGGGTTGATCGCAGTCACTGATTATGGAGGCCATTGCATTCTGTTATACAATGCGAAAGGAGAGTATCAGCGAGAACTGGGTTCGTATGGAGAGAATGAAGGCCAATTTAACCAGCCACAAGATATAATTTTCATCAACGATGACGAGGTTTTAGTTGCCGATGGAAGCAATCACCGCATTCAGCAATTTAACGTTAAAACAGGAAACTTTGTCAAAAGCTTTGGCAAGGAAGGAACAGGAGCTGGAGAGTTCTGTTTGCCCACCGGTGTTTCTATTAATGATTCAGGGAATATTGTCGTAACTGATATGTGCAACAGGAGAGTCCAAGTTTTGACCGAGGATGGCGAACATTTGCTTACATTTGGGGATAATGGCGAACTTCACCGACCAGGAAAGTGCATTTACTGGCGGGATGCTTATATTCCCAAAGCTGGACAAAGTTATTACGAAAACCTTTGCATGAAAGCTGTTAACCAATCAATAGGTCGAGCTATTCGTCACAGAGGGGACTATGCGACGATTCTTCTGTTAGATCAACGCTACGGCTCTGCCAGAATAACGAAAAGTTTGCCTGATTGGATATCAAACAGGCTCCAACATCACACTCGCTTTGGCTCTGCATTTGCCGCCATTCGCAAGTTCTTTGTGGATAAGAGGCAATTCATCGGTATCAAAGATTAGGGCAATAGTTGTAATCACAAGAGTTCCGAGGGGGTAGATTTTCAAAATAGACCCTGTTCTTAAGTCTAGCTCTCAAGGTATTTGTGAAAAGAATGCATTTATGTTCTTGAGTTGACTCAATGAAGTGTTTTTTGGGAAATAAAAGTGTACCATCTAT

Protein

Uniprot

Uniprot term	Description
F1R345	ATP-dependent DNA helicase DDX11 OS=Danio rerio OX=7955 GN=ddx11 PE=2 SV=1
O14147	ATP-dependent DNA helicase chl1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=chl1 PE=3 SV=1
Q6AXC6	ATP-dependent DNA helicase DDX11 OS=Mus musculus OX=10090 GN=Ddx11 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13307	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR006555	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan