Gene detail

Detailed information of amur_s0077.g8.t2 in Acropora muricata

Genomic Location: sc0000077_pilon:134736...137052
NR annotation: XP_029193171.1, retinal homeobox protein Rx1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amur_s0077.g8.t2

GCCCGCCTTGTTCTGTTAAATCACAGCTAGCACGAGCGGACCAAGTATTTTGTTAATAGATTACGGGACGATATAGTTTAGTCCAGTGGTGTTGTGACGTCTTTGGAGTGATGACAGGAATGACTTCGCTAGACAAGTCGACGCGAAAGGCCGATTTGGCGGACGAATTCAAGGATCTTGAAGACACCGGAGATTCTTGTCGACATTTCGGCTCAAGTCGGAAGAGAAAACGCGATGAAGCAAACTGTGGCTCGCCTACGAGTTCTAAAGACAGCCACAGCGATCGTGATTCAGATTACGATGACTCTAACGGAGAACATGCTGACGAGAATGGAGAAGGTTCCGCCACCAAGAAACACCGAAGAAACCGTACGACCTTTACGACGTTTCAACTCCACGAGCTCGAACAAGCGTTTGAAAAATCGCATTATCCCGATGTCTACACCAGGGAAGAACTTGCACTTAAGATAGACCTCCCTGAAGTCCGAGTACAGGTATATGAAAGTTTCATTTTGCTTTTGTGTACGTTTTCATCTGTGAAATATTTATCACACACGCCTAAGGCCTGGTTTGTGTTTTTTGTTGAAGTCTCTTTGGCACCCTCCGCTCTGAAGTCTAGTAAACTTCACCAGCAAGCATCATGATTTTATCGTTTGAGCATTTAGGTCAATTCCCCTTGGGGTCAAGCTCGAAGGTTAAATGTTTCGTTTAACATCTAATCGTTTAACTCACCATCGGCAAGAAATTTGACGCCCGAAAAGAAAAAAGAAAAAACAACGTTCACGAAAACAACGCTTGTGTAGTTGCAAAATAGCCAGAAAATAGTTCTTGTTTCTTTCTTTCCTTGGATTGGGCGTGGAGGATGTATATAAAGAGGAATCAAAAAGCATCAAATTGATCTCGTAAACCTACGTCAAACATCTTGCTAAACCCTTCGGCAAAAGAAATTAGAAAATTAAGAGCAAATCACCTAATTAAGTTGCCAGGTTTGAGGAACTTTCCTTCAGATTTTTGACTGTAATTACAAGCCATTAATTTCGAGAAAACAAACAGCATTTCCATAAAATGCAGGAAATGGTTTTCAAGATAATGAGACTTGATTCAAAATTAATATTTCATGAAAACTGGCTATTTTAACTTTTACTTTGAAGATACGTTAATTAAGGTAAACTTTGTCCAGTAAACGACCTTGAAGTATTAGCTGGGAAGAAAAAGCAACCTGATTATTGTTCAATTTCTCTCTAAAGTATCTCTTTGGTTGTCAAAACGCTTTTTCACTCACTCTTATATAAATCATTTACCCGTGAGACGTATTGCTGGTTGTTAGTTCTATATAATGACGTCCTTCATATGTGAAGACAATGGAAACTCCATACACCGTGTGAAAAATGTACTCTCTCACAGTATGCGAAGAAAAAGTTCCCAGAAGGCGTCGTAAAAGTGAATAGTAACCTAATTAAACCGTACTTCAAGCTTTTGTTTTCGAATTTTTTGAGTTATGATTGAAAATAATCCTTTTCCAAGCCACGTTTCAAATTTTCATGCCGCACAAACGCCCTCCCTAGGATTCGAAGGTGGAGTGAATTTTCACAGCTGCCACCACTCGACGCGAGTTTTCGAATAACCGAAACATCGAAATGCTAAAGTCATGAATGGCATTTAAAAAAACAGCAACCAGAGAAGAACTGGAAGGATTTCACACTTTTTCTGTATTTTTTTTCCCAACGGATGTACACCCTGTACAGCTGTACTGAAACTGCCGTTCGGTTGAGAAGAGAATTTATAGTTCTTTGTAATTTACCGTATTTGAAGTAGTTAAACTTTGCCTTTGTGTTTTAATGTGTTTATCTGCTGGAGAGTGTCTTGTTGAAATTGTTTTAATTTCCTGAGAAATTCCTTTTTAAGAGCTTGTCCTCAAATTTATTAGAGGAGAAACTTCGTAAAAACACAGCTATTAATTTCTCGTTCTATCTCATTTAAGCAAATTAACACTTCGTTCGCGCTTCTTACCATTCACTCTGTTTCCGAATTATACCTGAAAAGTGTGAAAAGCAATCTCAATTTAAAAGAGCTTCTTTGTGGCGAGAACCGTCTCAAATTGGTAAATATTTAATGTAACAAGAATTTTCGTTAAATATTGGTAACTGTTTCCCAAAACAAAAAACTGGAGATTGTGTT

Protein

Uniprot

Gene family

Uniprot term	Description
O42358	Retinal homeobox protein Rx3 OS=Danio rerio OX=7955 GN=rx3 PE=2 SV=1
O97039	Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica OX=6161 GN=RAX PE=2 SV=1
O42357	Retinal homeobox protein Rx2 OS=Danio rerio OX=7955 GN=rx2 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan