Gene detail

Detailed information of amur_s0087.g41.t1 in Acropora muricata

Genomic Location: sc0000087_pilon:479997...495780
NR annotation: XP_044179976.1, DNA polymerase alpha catalytic subunit-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amur_s0087.g41.t1

CATGTACGGCTGCTTAGGATTTTCTCATTCCCGTTTCTACGCTAAACCATTGGCTGCACTTGTTACAAGCAAAGGACGAGAGATCTTGATGAAGACAAAGGAATTGGTGCAAAACTTGGGTCTAGATGTTATCTACGGTGACACGGATTCAATTATGATTAACACCAACAGCAACGACCTCGCTGAAGTTCGCAAGATGGGAAACAAGGTCAAAAGTGAAGTGAACAAGCTCTACCGATTACTAGAGATTGATATTGATGGCATTTTCAAGTCTATGCTTCTTCTGAAGAAAAAGAAGTACGCTGCAATCAGTATCTCTGAGAACGAGGATGGAACGCTGAATGAAGTCAAAGAAATGAAAGGATTGGATATTGTGAGAAGGGACTGGAGCGACCTTGCCAAAGATGCTGGAAACTATGTGCTGGCACAAATTCTATCTTCACAAGCACGAGAATCAATTGTGGAAAACATTCATGATTACCTAACGTCAGTTGGAGAAAACGTGGCTGAGGGAAAAGTGGACCTTCAGAAGTTCATCATCAACAAGCAACTGACAAAATCTCCTCTGGATTACCCGGACAAGAAATCACTGCCTCATGTCAACGTCGCTCTGCGCATGCTCAGCAAAGGGAGGAAAGTTAACGCTGGTGACACCATCCCCTACGTCATCTGTGATGATGGTTCTACACTAGCGGCGACTCAACGATCTTATCACCCGGATGAGTTTTGCAAGTCTGAGACACTCCAAATCGATGTGAAATACTATCTCGCTAACCAGGTTCATCCAGTTGTATCTCGTTTGTGTGATCCTATCGACGGCACGGATGCTGCGCATATCGCCCAGTGCCTTGGGCTGGACCCGTCAGGTTATCGTGGCAACTCCGCTGCTCGAAATGACGAAACTGATGCAATGCTTGGTGGCCAGGCCCAGATGACAGACGAGGAAAGATTTAAGGATTGTGAACGATTTCGAGTTAAGTGCAAAGGCCCAGACTGTGGACAGGAAACAACACTTGAGTCAACCCCGTTTAGCGTGAATGACATATGCCCCAACTGTAAAATTCAGTACAGCACAGGCACTGTATGCAACCAATTGACCGTTACAATGCGGAGACACATTAAGGAATATTACATGGGTTGGCAGAAATGTGATGACCCGTCCTGTGGTTACCTCACTCGTCAGGTACCTCTGACCCGTCATCGGGGTGCTGCTACGTGCCCAGCATGCTGTAGGGCCCAGTTACATGCTGTGTACTCGGACACAGCTCTGTACACACAGCTGTTGTACTTCTCCCGTTTGTTTGACTGGGATATTGCGCTCAAGAACTCCAAAAATGACAAAAATTCTCAATTCAATGAGAGGAGAATGAAGCCATTTTATACAACTGTTCATTCAACAGTCGCCAAGTTTCTTGACGCCAATGGTTATTCCGAAGTCAGTCTTACGAAATTGTTCAGTGATTTCGCCTTTTAGTGGGAACGCATTAATTGTAGATAGCTAAAGGAAAAGAAACATTTATCTTCGTTAGAGTGTGCTATACTCTTTCGTTCCAGTCGCCAGCGCTAAATTAGCTCAATCTCGAATACTGTCTTTGAAAAGTGGTGCGATCCGTGAAAGCTTCTTGTGGTTCAAATCAAAGGACCAGTGAATTCCTTTGTATGGTTTTTGCTGAGGTTACCACGGAATCAGCGTATTTTATACGAATGCTAATTGGTTGATTGAATGTGCGGTTTTGTGTGAAAATATCTCGCTCTTCTCAGGATTGATTCAGGTAAATGAACTAATGCTTAGCACAAAGGATTCTTTTGTTCGTACGTTTACTTATTGCTTATTTTTTTTTTGTATAAAGTAGTTTTATGTAATCGCTGAAATTTTGGAACGTTATACAAAAGGGAGAAATGAACATATTCTCTTTGATTTCGCTAGAGTACATTATTTCGAGCTATACTTTGCCGTCATACTGAAAGGCGTTTCCTTCCTCTGTACATTTATTTGTATTATTTTTCGTAGTTTGTTTGCAATTTATTAAACCACGCTAGATCACTATTTTATTATTATTTTCCAACGTTATTTTGGAGACATTTGATCTTTACGTATCTAACTCTTACGCAATCTAGATGTATTGTAACTGAAAAATAATTTACACAGTAAGGGAGTAAAGTAATAAAGCGTCTGATTGATT

Protein

Uniprot

Uniprot term	Description
P09884	DNA polymerase alpha catalytic subunit OS=Homo sapiens OX=9606 GN=POLA1 PE=1 SV=2
P33609	DNA polymerase alpha catalytic subunit OS=Mus musculus OX=10090 GN=Pola1 PE=1 SV=2
Q9DE46	DNA polymerase alpha catalytic subunit OS=Xenopus laevis OX=8355 GN=pola1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF08996	zf-DNA_Pol	DNA Polymerase alpha zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042087	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR038256	Homologous_superfamily	DNA polymerase alpha, zinc finger domain superfamily	Interproscan
IPR015088	Domain	Zinc finger, DNA-directed DNA polymerase, family B, alpha	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45861	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005658	Cellular Component	alpha DNA polymerase:primase complex	Interproscan
GO:0006272	Biological Process	leading strand elongation	Interproscan
GO:0006273	Biological Process	lagging strand elongation	Interproscan
GO:1902975	Biological Process	mitotic DNA replication initiation	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan