Gene detail

Detailed information of amur_s0146.g12.t1 in Acropora muricata

Genomic Location: sc0000146_pilon:239996...243783
NR annotation: XP_029209206.2, tetratricopeptide repeat protein 28-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amur_s0146.g12.t1

ATGAAGAAGATTTTCAAGAACATTGCGAAAAAGCTGGGGTACCGAGAAGCTCCCTTTACGCCTAACAGctttcaagaagcccttgacaagaacgaaaaacaattgaaaattgccagggaaacagacgaccgcgccggagaaggaaaagcctattacaatcttggggtcgcttacgaatcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatccagggaagctggcgaccgggccaatgaaggaggtgtctatttcagccttgggtatgcttacgaatcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaaaaaacataggcaaccaggcgagcgggatagagaaggagatgtctacttcaatcttgggaatgcttacgactcccatgatgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatccaggaaagaaggcgaccgagctagagaaggagatgcgtatctaaatcttgggatcgcttacaattcccacggtgatttcccaaaagctattgagtgttatgaaaagagtttgaacatatccaggcaagcaggcgaccgggctagagaaggaggtgtttatttcagtcttgggtatgcttacgactcccacggcgacttcccaacagctatcgagtgttatgaaaagagtttgaacatatacaggcaagcaggcgaccgggatagggaaggaggtgtttatttcagtcttgggtatgcttacgatttccacggcaatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatacaggcaagcaggcgaccaagcgagagaaggagatgtctatttcaatcttgggagtgcttacgagtcccacgacgatttcccaaaagctatcgagtgttatgaaaagagtttggacatatccagacaagaaggcgacccaactagagaaggagatgtctatctaaatcttgggattgcttacgactcccacggcgatttgccaaaagctattgagtgttatggaaacagtttgaacatattcaggcaagcaggcaaccggggtaaagaaggagaatcctattacaatcttgggatcgcttacaactcctacggcgatttcccaaaagctatcgagtgttttgaaaagactttgaacatatacaggcaagcaggagaccgggatcgagaaggaaaagcctatgaaaatcttgggatcgcttacaaatcccacggtgattttgcaaaagctatcgagtgttttaaaaagagtttgaacatatacaggaaagcagaagaccgggatggagaaggaaatgtctattacaatcttgggaacgcttacaactcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatacaggcaatcaggagaccgtgatggacaaggagatgtctatttcaatcttgggatcgcttaccaatcccagggcgatttcccaaaggctatccagtgctatgaaaagagtttgaacatttcccgagaagcaggtaaccgggctacagaaaaaagggcctgtcttaaacttgaagatgcttacctatcccgcagggattttccaaaggctatcgagtgttacagagagagtttgaacattgccagagaagcaggttctcggagtggagTATCTTGGCCTTTGGTCGTTGGCGATGTTTCAAAAGCTCCTGAATATCGAGAAAGGCATTTAAAAATTGTCAGACAAGTGGGTGGTCTTACTGAGGAGGTAGCAGAGGCAGGACCTTACAATATCCACGtcggaggccggtggaaagatgttgcagacagactgggcttaaggggaagtgagatccaatttcttgacgagagatatccgaatcccagtgaagctacattggactttgtggctcattatcagggcatgaatgtggatggtctgtacgatgtgttaactgagtgtgggatgcctatgctggctgatattttgtga

Transcript

amur_s0146.g12.t1

GCCTACAAAGCAAAATCTCGGTGCTTCAAATTGCGTTATTGATTTGCTCAGAAGATAATCGAAGGGAATTTCGATCTTGGAATCAGTTATATATTTATTTGAAAAACCATTTCACATTAATGAAGAAGATTTTCAAGAACATTGCGAAAAAGCTGGGGTACCGAGAAGCTCCCTTTACGCCTAACAGctttcaagaagcccttgacaagaacgaaaaacaattgaaaattgccagggaaacagacgaccgcgccggagaaggaaaagcctattacaatcttggggtcgcttacgaatcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatccagggaagctggcgaccgggccaatgaaggaggtgtctatttcagccttgggtatgcttacgaatcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaaaaaacataggcaaccaggcgagcgggatagagaaggagatgtctacttcaatcttgggaatgcttacgactcccatgatgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatccaggaaagaaggcgaccgagctagagaaggagatgcgtatctaaatcttgggatcgcttacaattcccacggtgatttcccaaaagctattgagtgttatgaaaagagtttgaacatatccaggcaagcaggcgaccgggctagagaaggaggtgtttatttcagtcttgggtatgcttacgactcccacggcgacttcccaacagctatcgagtgttatgaaaagagtttgaacatatacaggcaagcaggcgaccgggatagggaaggaggtgtttatttcagtcttgggtatgcttacgatttccacggcaatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatacaggcaagcaggcgaccaagcgagagaaggagatgtctatttcaatcttgggagtgcttacgagtcccacgacgatttcccaaaagctatcgagtgttatgaaaagagtttggacatatccagacaagaaggcgacccaactagagaaggagatgtctatctaaatcttgggattgcttacgactcccacggcgatttgccaaaagctattgagtgttatggaaacagtttgaacatattcaggcaagcaggcaaccggggtaaagaaggagaatcctattacaatcttgggatcgcttacaactcctacggcgatttcccaaaagctatcgagtgttttgaaaagactttgaacatatacaggcaagcaggagaccgggatcgagaaggaaaagcctatgaaaatcttgggatcgcttacaaatcccacggtgattttgcaaaagctatcgagtgttttaaaaagagtttgaacatatacaggaaagcagaagaccgggatggagaaggaaatgtctattacaatcttgggaacgcttacaactcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatacaggcaatcaggagaccgtgatggacaaggagatgtctatttcaatcttgggatcgcttaccaatcccagggcgatttcccaaaggctatccagtgctatgaaaagagtttgaacatttcccgagaagcaggtaaccgggctacagaaaaaagggcctgtcttaaacttgaagatgcttacctatcccgcagggattttccaaaggctatcgagtgttacagagagagtttgaacattgccagagaagcaggttctcggagtggagTATCTTGGCCTTTGGTCGTTGGCGATGTTTCAAAAGCTCCTGAATATCGAGAAAGGCATTTAAAAATTGTCAGACAAGTGGGTGGTCTTACTGAGGAGGTAGCAGAGGCAGGACCTTACAATATCCACGtcggaggccggtggaaagatgttgcagacagactgggcttaaggggaagtgagatccaatttcttgacgagagatatccgaatcccagtgaagctacattggactttgtggctcattatcagggcatgaatgtggatggtctgtacgatgtgttaactgagtgtgggatgcctatgctggctgatattttgtgacctAAGGTCTGCGTAACCGTTCGTCTTGGAGCCAAGAGCTATTTTAACCTTTGTTTTTGAGGAAGCCTCCTTAGTAATATGACTGCTGGTTTAGTTTTTCTATTCGATGTTGTCATCTTACAGCAACGTATAAGTATAGGTGTCTGCGGCTTGTATTAACCTTATCTTAATGTCTATACGTAACATAGGAAAAGTTCTTAAACAATGAAACAAAGAATAGGAATGGAATGAACTGTTGACCAAACTACATTTTCCAATGAAGGTTTTCTTGAGGATTTTTCCCTTTTTTGTTTTCACTTAAAAGTTTTTTATTCAATGTAAAAACAGCGAAAATTTGGTTCTTCATCGCTAGTTTCTGATATTGAGCTTCTGAGTCAGTAACGTGCCCTATGGCCAGAAAACGTAAAACTAGCCTCTCTATTTCGTTCATTAAAATTGCTTTTTTACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13176	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR006597	Repeat	Sel1-like repeat	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07126	K07126; uncharacterized protein	-	Function unknown	-	deepkoala