Gene detail

Detailed information of amur_s0201.g3.t2 in Acropora muricata

Genomic Location: sc0000201_pilon:20607...31775
NR annotation: XP_044177526.1, CLIP-associating protein 1-B-like isoform X1 [Acropora millepora]
Species Acropora muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amur_s0201.g3.t2

ATGCGAACGGTAAAGGGAAAAAACTGGCCGACGTGTCCATGCCATCGACGCCGGGTTGAATTTGTCGTTTATAAACGCTATATTGTAAGAACAGTATTTCCTGGGAATCCACGCGAAGAATGGCTTTGGTTCAAGTATTGTCGAAGGAAAGGCATTTTTCTCTTCATTCGTCCTAGTGGTGTTATTCTATTTCGACAGGAGGTGGGAGAAATAGTTCGCTTAACAAGCAGCAATGTATGGTCTGATAGAAGAGACGGTGTGATGTGTCTGCAGAGTTTTTTGCTTAACTCTGGTGTCCTGAGCCAAGTAGAACTGTCGAAGATCAAGGATTGCCTCACCAGACTATTTTTTGATCCTCACAACAAGGTTTATAGTTTATTTTTGGACGCTCTGTGTGACTTTATTGTTGTTAACAAAGTGGATCTTCATGATTGGTTGTTTGTCTTGCTGTCACGACTTCTCACCAAGCTTGGAACAGAACTGCTTAATTCCTTACAGTCGAAAGTTGTGAGGGTTTTAGATGTGATTAGAGATTCGTTTCCCTACGATCTTCAGTTTAGTATTTTAACAAGATTCATTACTGATCAAACCCAGACACCAAATCTCAAGGTCAAAATAGCCATATTGCAGTATCTACAAGGACTTATCGGCTTGATGGATCCCAGCGATTTTACAAACTCTGGTGAAACTCGTTTGGCGGTGTCCCGGATAATCACGTGGACGACAGAGCCCAAAAGCGTGGACGTAAGAAAGGAATCTGCAGCGGTTATTGTCGCGTTGTTTGAGCTCAATACCCCTGAGTTCAGCATGATGCTAACAGTTTTACCCAAATCATTTCAGGATGGGGCGACTAAACTATTGCATAATCATCTAAAAAGCAGCACCCAGGGCGCAGAGCCATTTGCCGCTGGCCGCGGTTCACCGTCGACGTCTTCGTCCAATTACGATGAGGTAGAAGAACGACCGAGGCTAAGATTAGGTTACAGAACCTTGTCCTCACCTTCTATGAAAGCAATGGCCCCGATTAAAGACGAAAGTAGTAACGATCAACCGAGCTCTCCCGATCATCACACGAAGCTACCCACACCCGCCAAAACAACGCAGAGTCCTCGTGGAAGTCAGACAAGATTTGGGTTTTCTCCAAAGACAAATACAACCTCCTTACATGAAGACAGCATCTTCGAAGTAGAGCCCTTGAGTTCAAGCGAGTCTCTGGACGGACGCTATGGTTCTGCCTCGCCGTCCAATCGTGGAGACGCTGCTGCTGCTACTGCATATCAAGGAGATGATGCACCGAGCGTTTCATCCGGGTACAACAGTGATGACATCACCTCTGGTCAAGCGGAAAACCACCGACGAGCAAGTGGAGCATCTGCTGGGCCAGCAACAACGGGTGTTCCCGCAGGCGAGACACCCGCGGGACAGAAGTATGACCCGAGGCAGTACCAAGACAGACAAAATGATTTCCATCCGTTACCGGAAGTTAATGGATTTCTTACCGCTGGCCGGAAGAAGAATGGTGAAGTAGAGGACGAGCTGGATAGATCACTGGAGGGAATGGACCATAGTGAAGATCAGTTTGATAAAGATAATTTAGCGGAACACTCCGATACCCTATCACCTGTCATGGTTCCTTTGGGGGCACCATCGGGTATGCAGACCGAGGAAAAGAAAGAAGCGTTTGGAGAATTGCTGAAGATGACCCGCGAGAAGATCCCTGCTTTATGGGAAGAGAAGTTAACCACCCTCCTTTCGTTAATTTTGAAGAATATTGGCGATGATGAGCCTGGTGTTCGACTTCTGGCTCTTCGGGTGCTAAGGGATCTGGTACGGACCAAGCCTAACGCCTTCAAGCAACCAATGGACAAAGTGATCGAGACAGTATTGATTGCACACAAAGACACGCAGAAAGAGGTTGTGCGAGTGGCCGAAGAGGCTGCTGGGACGATTGCCAAATCACTTGTTCCGAGGCTTTGCCTTCAAGCCTTGTCCCCAGTCCTTCGAGAAGCAGAATTTCCCGTCAACCTTGCGGCTCTTAAAATGGCAGTTAAGGTTGTTGAAGATATTGACAGCAAAACAGTGGAAGAGAACCTCGGAGAGCTCGTTCCTGGATTAATAAGGTGTTATGACCACGTGGAGAGCAGTGTTCGTAAAGCCAGCGTGTTCTGTCTCGTGGCCATACACCAGGCAGTGGGAGAAGACATTTTAATGCCACACCTTGCAGAGTTGTCAGGAACGAAGATGAAGCTGCTAAATCTCTACATTAAGAGATCCCAGGCTGGGAACGGTAATGGTCGTTCGTGA

Transcript

amur_s0201.g3.t2

GTTAGCAAATGTGATGGATGAATAGACAGAGAGACAGATCGCTCACTCATAAATTACACATCAATTCGACATGTTTAGTGCTTTTGGCCAGCAAACCTAAGTGGATGTATCAAGTTGCGCGGATTGTCTTCGAGAAAGGACTGAAGTATACATAGCCTTTATTCTGCTTACGCTTTTTAAGCAAATCTAGCTTCCCGTGATGAAAACGAAGAATGAGAAATCTGCTCGTCCAAATAGCACCACGGCGTAGAACCAGCGTCTATCAATCTATCAAACATGCGAACGGTAAAGGGAAAAAACTGGCCGACGTGTCCATGCCATCGACGCCGGGTTGAATTTGTCGTTTATAAACGCTATATTGTAAGAACAGTATTTCCTGGGAATCCACGCGAAGAATGGCTTTGGTTCAAGTATTGTCGAAGGAAAGGCATTTTTCTCTTCATTCGTCCTAGTGGTGTTATTCTATTTCGACAGGAGGTGGGAGAAATAGTTCGCTTAACAAGCAGCAATGTATGGTCTGATAGAAGAGACGGTGTGATGTGTCTGCAGAGTTTTTTGCTTAACTCTGGTGTCCTGAGCCAAGTAGAACTGTCGAAGATCAAGGATTGCCTCACCAGACTATTTTTTGATCCTCACAACAAGGTTTATAGTTTATTTTTGGACGCTCTGTGTGACTTTATTGTTGTTAACAAAGTGGATCTTCATGATTGGTTGTTTGTCTTGCTGTCACGACTTCTCACCAAGCTTGGAACAGAACTGCTTAATTCCTTACAGTCGAAAGTTGTGAGGGTTTTAGATGTGATTAGAGATTCGTTTCCCTACGATCTTCAGTTTAGTATTTTAACAAGATTCATTACTGATCAAACCCAGACACCAAATCTCAAGGTCAAAATAGCCATATTGCAGTATCTACAAGGACTTATCGGCTTGATGGATCCCAGCGATTTTACAAACTCTGGTGAAACTCGTTTGGCGGTGTCCCGGATAATCACGTGGACGACAGAGCCCAAAAGCGTGGACGTAAGAAAGGAATCTGCAGCGGTTATTGTCGCGTTGTTTGAGCTCAATACCCCTGAGTTCAGCATGATGCTAACAGTTTTACCCAAATCATTTCAGGATGGGGCGACTAAACTATTGCATAATCATCTAAAAAGCAGCACCCAGGGCGCAGAGCCATTTGCCGCTGGCCGCGGTTCACCGTCGACGTCTTCGTCCAATTACGATGAGGTAGAAGAACGACCGAGGCTAAGATTAGGTTACAGAACCTTGTCCTCACCTTCTATGAAAGCAATGGCCCCGATTAAAGACGAAAGTAGTAACGATCAACCGAGCTCTCCCGATCATCACACGAAGCTACCCACACCCGCCAAAACAACGCAGAGTCCTCGTGGAAGTCAGACAAGATTTGGGTTTTCTCCAAAGACAAATACAACCTCCTTACATGAAGACAGCATCTTCGAAGTAGAGCCCTTGAGTTCAAGCGAGTCTCTGGACGGACGCTATGGTTCTGCCTCGCCGTCCAATCGTGGAGACGCTGCTGCTGCTACTGCATATCAAGGAGATGATGCACCGAGCGTTTCATCCGGGTACAACAGTGATGACATCACCTCTGGTCAAGCGGAAAACCACCGACGAGCAAGTGGAGCATCTGCTGGGCCAGCAACAACGGGTGTTCCCGCAGGCGAGACACCCGCGGGACAGAAGTATGACCCGAGGCAGTACCAAGACAGACAAAATGATTTCCATCCGTTACCGGAAGTTAATGGATTTCTTACCGCTGGCCGGAAGAAGAATGGTGAAGTAGAGGACGAGCTGGATAGATCACTGGAGGGAATGGACCATAGTGAAGATCAGTTTGATAAAGATAATTTAGCGGAACACTCCGATACCCTATCACCTGTCATGGTTCCTTTGGGGGCACCATCGGGTATGCAGACCGAGGAAAAGAAAGAAGCGTTTGGAGAATTGCTGAAGATGACCCGCGAGAAGATCCCTGCTTTATGGGAAGAGAAGTTAACCACCCTCCTTTCGTTAATTTTGAAGAATATTGGCGATGATGAGCCTGGTGTTCGACTTCTGGCTCTTCGGGTGCTAAGGGATCTGGTACGGACCAAGCCTAACGCCTTCAAGCAACCAATGGACAAAGTGATCGAGACAGTATTGATTGCACACAAAGACACGCAGAAAGAGGTTGTGCGAGTGGCCGAAGAGGCTGCTGGGACGATTGCCAAATCACTTGTTCCGAGGCTTTGCCTTCAAGCCTTGTCCCCAGTCCTTCGAGAAGCAGAATTTCCCGTCAACCTTGCGGCTCTTAAAATGGCAGTTAAGGTTGTTGAAGATATTGACAGCAAAACAGTGGAAGAGAACCTCGGAGAGCTCGTTCCTGGATTAATAAGGTGTTATGACCACGTGGAGAGCAGTGTTCGTAAAGCCAGCGTGTTCTGTCTCGTGGCCATACACCAGGCAGTGGGAGAAGACATTTTAATGCCACACCTTGCAGAGTTGTCAGGAACGAAGATGAAGCTGCTAAATCTCTACATTAAGAGATCCCAGGCTGGGAACGGTAATGGTCGTTCGTGATAGATTGGCGACGAGGGACCAANNNNNNNN

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80TV8	CLIP-associating protein 1 OS=Mus musculus OX=10090 GN=Clasp1 PE=1 SV=2
Q7Z460	CLIP-associating protein 1 OS=Homo sapiens OX=9606 GN=CLASP1 PE=1 SV=1
Q99JD4	CLIP-associating protein 2 OS=Rattus norvegicus OX=10116 GN=Clasp2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001513 (this species only)

Pfam domain

No Pfam domain signature was detected for amur_s0201.g3.t2. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR034085 all species →	Domain	TOG domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21567 all species →	CLASP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0005876 all species →	Cellular Component	spindle microtubule	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0040001 all species →	Biological Process	establishment of mitotic spindle localization	Interproscan
GO:0045180 all species →	Cellular Component	basal cortex	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:0090307 all species →	Biological Process	mitotic spindle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16578	CLASP1_2; CLIP-associating protein 1/2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.