Gene detail

Detailed information of amur_s0230.g2.t1 in Acropora muricata

Genomic Location: sc0000230_pilon:97611...103725
NR annotation: XP_029183414.2, uncharacterized protein K02A2.6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amur_s0230.g2.t1

ATGCTTCATGTTGATCCACAGTGTGAACCAGTTGCACAGCCAGTTAGACGGGTCCCCTTTGGTTACAAGGACAAGGTCACTCAGTTGCTTGAGCACTTGGTAGCAGAGGATATAATTGAGCCAGTAGAGGGAGTTGGTTCCAGGTGGGTGAGCCCGATAGTTATTGTTCCTAAGTGTAACAGCGAAGTCCGAATGTGTATTGATATGAGACAAGCAAACAAAGCTATCGTTCGTGAGCGTTACCCTATTCCCACTGTACAAGAGATGTTGGTGGAAATGAATGGGGCCAAGGTTTTTTTGAGTGTGAGTTGGAGACAGGGTCGAGAGATGTATGTCCCTGATTTAGCAACCGTAGCTGCGCTGCTGCGGGAGTTAACAAAGAAGTCTGTTGAGTTTCATAAGGGCCCAAATCATGAGAAGAGCTTTAAGAAGATTCAGCAGTTGATGAGTTCTTGTGAAACTTTGGCTTATTTATCTTATTTTTATCGGAATGCATCAATTACTTTGGTAGCTGATGCAAGCCCAGTGGGGTTAGGCACTGTCCTTCTCCAAGAGCAAGGGGGCATCAACAGAGTAATTGCTTATGGGCATAGGAGTTTATCTGAGGTGGAGAGTAGATATTCGCAGACCGAACGGGAGGGTCTGGGCATGCGACAGTTTAAGATGTATCTTCTTGGTAGCAGGTTTCGCTTGATTACAGACCATAAGCCTTTGGTGCATATTTATAGCAATGCTAGGTCTAAACCTACACCCAGGCTCGAGAAGTGGAGTCTAAGGCTTCAGCCTTATGATTTTCAGATTGTGTATAAGCCTGGTGCTTCCAATATTGCTGATCCTATGTCAAGGTTGTCTATTAGTAACGATTTGGCAGAGGCGATTGATGATGCTAAAGATTACATAGGAATGTTAAATGTAGACGCTGTCCCACACGCCATGTCATGGGGTCAGATACAGGTAGCATCAGATTTTTGTCCAAAGGTCCAGACAATCAAGGAACCAGTCACAACAGCTTGTGTGGAGAAGAAGGATCTCCAGGTTGAGTTCAGGAAGTTTCTTGTTGCTTACCGTTCTACACCGCATTATGGAACGGGATGCACACCATTTGCTCTGATGTTTGGCAGAGAAATGAGGACAAAGATCTTACAACGGCAAACATCAGTTAGGAGTAAAGAGGTCGTTAGAGATAATGATGCTGAGTATAAGTTGAGTATGAAGGCATATGCAGACAGGAGTGCTTCAGAGAGTAAGGTTGAGGATGAACAGAAGAAACATACCCCAGCATTGCTATGGAAGAAAGACGTGTTGGGTCTGTTACCAAGAGGATTTGGTAAAAGCTTAATTTTCAAACCATATCTGGGAATCTTCGAGTTGGTGAACGGCAGAAAAAATTCTCACGTTATCATTCTCAGCGCGTTGAATGCTATAACCAAACAGCAGGTTCAGGAAATTGCCGACACAGGCATATCAGCTGTAGCTGTTGGCCATAGCCGTGAAACTGATGAAAATATACTAAAGGGCGAATACAAGTTGGTCTTTGGTAGTGCAGAAAACAAAGAAACAATGTGGAGCTTAGTCGTTGATGAAGCTCATGTTGCTCAAAGTTGGAACTCCGTTACTTGCCTTGACGGCCACTGTGGAACAGAGAAGCAGAGAGCTCTCGTGAAGCTTCTTGGGATGCCTAAAGCAAGTGTGATTGATGTGCCAGGTATCCATCAAAACATACGGTTCTCTGTCAAGAATGTCAAGACGGGGCTGAGTTGCTTCAATTGGCTTGTTGACAAGATTGGCACTAAACAGGAGGAAACTCCTAAGACTATTGCATTTTGTAGGAGTATTAATGACATTCCAGTTGTATTGAGCCACCTTGCTTATAAAGATGAGAACAAGTCAAAAAGTGAGTGTCTATTTGAAGTGTACCGCAGCAACAGCCCTGCTGAACTAAGAGAGCGAGTAAGAAAGTCCTTAAGGAATGATGATGGTCCCATTAGAGTAGTAATTGCCATCTCTGCACGTAGCCTAGGAGTGAACTTCAGACATCAGATATGTCAAACACTATGGTCCTGCCCCGGATTTGCGTAG

Transcript

amur_s0230.g2.t1

TTAAGGGTTGCAATATTATGCTTCATGTTGATCCACAGTGTGAACCAGTTGCACAGCCAGTTAGACGGGTCCCCTTTGGTTACAAGGACAAGGTCACTCAGTTGCTTGAGCACTTGGTAGCAGAGGATATAATTGAGCCAGTAGAGGGAGTTGGTTCCAGGTGGGTGAGCCCGATAGTTATTGTTCCTAAGTGTAACAGCGAAGTCCGAATGTGTATTGATATGAGACAAGCAAACAAAGCTATCGTTCGTGAGCGTTACCCTATTCCCACTGTACAAGAGATGTTGGTGGAAATGAATGGGGCCAAGGTTTTTTTGAGTGTGAGTTGGAGACAGGGTCGAGAGATGTATGTCCCTGATTTAGCAACCGTAGCTGCGCTGCTGCGGGAGTTAACAAAGAAGTCTGTTGAGTTTCATAAGGGCCCAAATCATGAGAAGAGCTTTAAGAAGATTCAGCAGTTGATGAGTTCTTGTGAAACTTTGGCTTATTTATCTTATTTTTATCGGAATGCATCAATTACTTTGGTAGCTGATGCAAGCCCAGTGGGGTTAGGCACTGTCCTTCTCCAAGAGCAAGGGGGCATCAACAGAGTAATTGCTTATGGGCATAGGAGTTTATCTGAGGTGGAGAGTAGATATTCGCAGACCGAACGGGAGGGTCTGGGCATGCGACAGTTTAAGATGTATCTTCTTGGTAGCAGGTTTCGCTTGATTACAGACCATAAGCCTTTGGTGCATATTTATAGCAATGCTAGGTCTAAACCTACACCCAGGCTCGAGAAGTGGAGTCTAAGGCTTCAGCCTTATGATTTTCAGATTGTGTATAAGCCTGGTGCTTCCAATATTGCTGATCCTATGTCAAGGTTGTCTATTAGTAACGATTTGGCAGAGGCGATTGATGATGCTAAAGATTACATAGGAATGTTAAATGTAGACGCTGTCCCACACGCCATGTCATGGGGTCAGATACAGGTAGCATCAGATTTTTGTCCAAAGGTCCAGACAATCAAGGAACCAGTCACAACAGCTTGTGTGGAGAAGAAGGATCTCCAGGTTGAGTTCAGGAAGTTTCTTGTTGCTTACCGTTCTACACCGCATTATGGAACGGGATGCACACCATTTGCTCTGATGTTTGGCAGAGAAATGAGGACAAAGATCTTACAACGGCAAACATCAGTTAGGAGTAAAGAGGTCGTTAGAGATAATGATGCTGAGTATAAGTTGAGTATGAAGGCATATGCAGACAGGAGTGCTTCAGAGAGTAAGGTTGAGGATGAACAGAAGAAACATACCCCAGCATTGCTATGGAAGAAAGACGTGTTGGGTCTGTTACCAAGAGGATTTGGTAAAAGCTTAATTTTCAAACCATATCTGGGAATCTTCGAGTTGGTGAACGGCAGAAAAAATTCTCACGTTATCATTCTCAGCGCGTTGAATGCTATAACCAAACAGCAGGTTCAGGAAATTGCCGACACAGGCATATCAGCTGTAGCTGTTGGCCATAGCCGTGAAACTGATGAAAATATACTAAAGGGCGAATACAAGTTGGTCTTTGGTAGTGCAGAAAACAAAGAAACAATGTGGAGCTTAGTCGTTGATGAAGCTCATGTTGCTCAAAGTTGGAACTCCGTTACTTGCCTTGACGGCCACTGTGGAACAGAGAAGCAGAGAGCTCTCGTGAAGCTTCTTGGGATGCCTAAAGCAAGTGTGATTGATGTGCCAGGTATCCATCAAAACATACGGTTCTCTGTCAAGAATGTCAAGACGGGGCTGAGTTGCTTCAATTGGCTTGTTGACAAGATTGGCACTAAACAGGAGGAAACTCCTAAGACTATTGCATTTTGTAGGAGTATTAATGACATTCCAGTTGTATTGAGCCACCTTGCTTATAAAGATGAGAACAAGTCAAAAAGTGAGTGTCTATTTGAAGTGTACCGCAGCAACAGCCCTGCTGAACTAAGAGAGCGAGTAAGAAAGTCCTTAAGGAATGATGATGGTCCCATTAGAGTAGTAATTGCCATCTCTGCACGTAGCCTAGGAGTGAACTTCAGACATCAGATATGTCAAACACTATGGTCCTGCCCCGGATTTGCGTAGTCAATTGCAAGAAGCAGGCAGGGATGGCAAAGAGGCACATAATATCATGTTTTACAATGGTCAGCAGCTGCGTCTCTGTGACAAAAAATTAAAGCTTGCTTCAAAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan