Gene detail

Detailed information of amur_s0596.g8.t1 in Acropora muricata

Genomic Location: sc0000596_pilon:111156...113536
NR annotation: XP_033988662.1, uncharacterized protein LOC117484300 [Trematomus bernacchii]

Gene Structure

More details in Jbrowse

Sequence

CDS

amur_s0596.g8.t1

ATGGAGGGGCCACCGATTGAGATTCACGTCGAACCTACTGCCACCCCCAAAGCATGCCACACCCCGGCCCCAGTGCCCCTACACTGGCAGCGACGCGTGTACGAAGACCTCCTCCGCGACGAGGCTCTCGGTGTCATAGAACGCGTACCATATGGCGAACCCGTGACATGGTGCCACCGAATGGTGATCACACAAAAGCATGATGGCTCCCCCCGTCGCACAGTAGATCTCTCCCCGCTAAACAAGTTCTGCAGACGTGAGACATTCGCCACAGAGACACCCTTCCACCTGGCACCTCGTATCCCCAAAGACACGTGGAAAACAGTCACGGATGCTTGGAATGGTTACCGCAGCGTACCTCTGCGCCAGTCTGATCGCCACTTGACCACTTTTGTTACTCCGTTCGGTCTATGGCGGTACACAAGAGCGCCTCAAGGATTCCTCTCGTCAGGAGATGGTTACAACCGCCGCTTCGATGCTGTCCTGTCCACCTTCGAGCGCAAGGAACGCTGCGTCGATGACACCATACACTATGACTCTGACCTAGAGCAGCACTGGTGGAGAACAATTGACTTCCTCAAACGCGTAGGCCAGGCCGGCATCGTGCTAAACCTTGACAAATTCCAGTTCGCCGAGAGGAGCGTCGATTTCGCGGGATTTAGAGTATCAGACTCCACCATTGAGCCACTTCCAAAATACCTCGATGCAATCAAAGACTTTCCCTCTCCGACCTCCACAACGGATATCAGAAGCTGGTTTGGCCTAGTCAACCAGGTTGCAAACTACGCCCAGTTACGGGACATCATGGAACCATTCAAGCCCTTCCTCATTCCCCGATGCAAGTTCTCCTGGTCTCCCCAATTGGAGGAGGCCTTTCGATTATCTAAAGATGCCATCATTTGTGCCATCCGTGAGGGTGTGGAGATCTTTGACATGCATAGACGCACCTGCCTTCGCCCAGACTGGTCCACGCGTGGCATAGGCTACTTCCTCCTCCAGCAACACTGCAGCTACCCCTCTGGCGTTCCCGACTGCTGCCCTGGGGGATGGCGGATCGTCCTGGCCGGCTCACGGTTCCTGACCCCTGCGGAACAACGCTACGCTGCCATCGAAGACGAGATAACCAATTCACGGTTGTTCCGACTCAAACAGCGCACCCTTCCCTGGCGCTTCGACATCAAGCACCTGCCTGGCAAAACCAACCACGCCGCCGATGCAACGTCCAGGCACCCTTCACCGTCCGGCTCAGTACATGGTACCTCCGTTGGAGTGTCCAGCATCCCTGACCTCGTGGAGTCAGCACTGATGGCCTCTATCCGCCAAGACACTCAGGACGTTGGCACCATCTCATGGTCCCTCGTCGGACGCGAGACGGCCTCAGACACCGCTCTGAGTTCACTCCTTAAGCTCATTGAACAGGGGAACCCCAGCCTTGCCCGCAATGACCACTCCCTCGCACCTCTATGGCCCATCTGTGAGTCTGTGTATGCACAGGAGGGTGTCCTCTTGTATCAGGACCGCGTCATCGTACCTTCGTCACTCCGCTCCCGCGTACTACAGCACCTCCATGCAGCTCACCAGGGAACCTCAATGATGGCACAGCGTGCCCGAGCCATAGTTTACTGGCCAGGCATGTATACCGATATCCGCAACACGAGAGACGGATGTGCAGACTGCAATAGAAATGCACCCACACAGGCAGCCACGCCTCCTCCCCCCGCCACGCCACCCTCTACCCCGTTTGAAGCCGTGTTCGCCGACTTTTTCACCTTTGGCGACCGCCATTACCTCGTGGTGGGTGATCGCCTTTCCGGCTGGGTCGAGGTTCTTGGATCTCCAGCAGGTACAACCCTGCTGCCGGCCCCATTCGCCATCTCCGTTCCTTCTTCGCCACGTTTGGTGTACGGGAGGGAACTTTCCAGTGATGGTGGCCCAGAATTCAGTGCAGGTTGTACAGAACCTTTCTTCCGTCTCTGGGGAGTACGACATCGTGTGTCCTCGGCCCACTTCCCTCAGTCTAATGGCAGAGCAGAGGTGGCAGTAAAGTCAGCCAAGCGCCTTCTTATGTCCAATATGAGCTCCATCGGCAGCCTTGATCATGACCGGTTCCTGCGTGCCATGCAATTATGCATTAAACGAGTGACAACAGAGCAATTGTGA

Transcript

amur_s0596.g8.t1

CTCAACATTTAACACGTGCCCGCACCGAGCATTACCCAGCATGGAGGGGCCACCGATTGAGATTCACGTCGAACCTACTGCCACCCCCAAAGCATGCCACACCCCGGCCCCAGTGCCCCTACACTGGCAGCGACGCGTGTACGAAGACCTCCTCCGCGACGAGGCTCTCGGTGTCATAGAACGCGTACCATATGGCGAACCCGTGACATGGTGCCACCGAATGGTGATCACACAAAAGCATGATGGCTCCCCCCGTCGCACAGTAGATCTCTCCCCGCTAAACAAGTTCTGCAGACGTGAGACATTCGCCACAGAGACACCCTTCCACCTGGCACCTCGTATCCCCAAAGACACGTGGAAAACAGTCACGGATGCTTGGAATGGTTACCGCAGCGTACCTCTGCGCCAGTCTGATCGCCACTTGACCACTTTTGTTACTCCGTTCGGTCTATGGCGGTACACAAGAGCGCCTCAAGGATTCCTCTCGTCAGGAGATGGTTACAACCGCCGCTTCGATGCTGTCCTGTCCACCTTCGAGCGCAAGGAACGCTGCGTCGATGACACCATACACTATGACTCTGACCTAGAGCAGCACTGGTGGAGAACAATTGACTTCCTCAAACGCGTAGGCCAGGCCGGCATCGTGCTAAACCTTGACAAATTCCAGTTCGCCGAGAGGAGCGTCGATTTCGCGGGATTTAGAGTATCAGACTCCACCATTGAGCCACTTCCAAAATACCTCGATGCAATCAAAGACTTTCCCTCTCCGACCTCCACAACGGATATCAGAAGCTGGTTTGGCCTAGTCAACCAGGTTGCAAACTACGCCCAGTTACGGGACATCATGGAACCATTCAAGCCCTTCCTCATTCCCCGATGCAAGTTCTCCTGGTCTCCCCAATTGGAGGAGGCCTTTCGATTATCTAAAGATGCCATCATTTGTGCCATCCGTGAGGGTGTGGAGATCTTTGACATGCATAGACGCACCTGCCTTCGCCCAGACTGGTCCACGCGTGGCATAGGCTACTTCCTCCTCCAGCAACACTGCAGCTACCCCTCTGGCGTTCCCGACTGCTGCCCTGGGGGATGGCGGATCGTCCTGGCCGGCTCACGGTTCCTGACCCCTGCGGAACAACGCTACGCTGCCATCGAAGACGAGATAACCAATTCACGGTTGTTCCGACTCAAACAGCGCACCCTTCCCTGGCGCTTCGACATCAAGCACCTGCCTGGCAAAACCAACCACGCCGCCGATGCAACGTCCAGGCACCCTTCACCGTCCGGCTCAGTACATGGTACCTCCGTTGGAGTGTCCAGCATCCCTGACCTCGTGGAGTCAGCACTGATGGCCTCTATCCGCCAAGACACTCAGGACGTTGGCACCATCTCATGGTCCCTCGTCGGACGCGAGACGGCCTCAGACACCGCTCTGAGTTCACTCCTTAAGCTCATTGAACAGGGGAACCCCAGCCTTGCCCGCAATGACCACTCCCTCGCACCTCTATGGCCCATCTGTGAGTCTGTGTATGCACAGGAGGGTGTCCTCTTGTATCAGGACCGCGTCATCGTACCTTCGTCACTCCGCTCCCGCGTACTACAGCACCTCCATGCAGCTCACCAGGGAACCTCAATGATGGCACAGCGTGCCCGAGCCATAGTTTACTGGCCAGGCATGTATACCGATATCCGCAACACGAGAGACGGATGTGCAGACTGCAATAGAAATGCACCCACACAGGCAGCCACGCCTCCTCCCCCCGCCACGCCACCCTCTACCCCGTTTGAAGCCGTGTTCGCCGACTTTTTCACCTTTGGCGACCGCCATTACCTCGTGGTGGGTGATCGCCTTTCCGGCTGGGTCGAGGTTCTTGGATCTCCAGCAGGTACAACCCTGCTGCCGGCCCCATTCGCCATCTCCGTTCCTTCTTCGCCACGTTTGGTGTACGGGAGGGAACTTTCCAGTGATGGTGGCCCAGAATTCAGTGCAGGTTGTACAGAACCTTTCTTCCGTCTCTGGGGAGTACGACATCGTGTGTCCTCGGCCCACTTCCCTCAGTCTAATGGCAGAGCAGAGGTGGCAGTAAAGTCAGCCAAGCGCCTTCTTATGTCCAATATGAGCTCCATCGGCAGCCTTGATCATGACCGGTTCCTGCGTGCCATGCAATTATGCATTAAACGAGTGACAACAGAGCAATTGTGAACATAGATGTTAGTCAAAATCTTCATCATTCCACCCACTAATAGATGTGGCCTGAAATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan