Gene detail

Detailed information of amur_s0852.g2.t2 in Acropora muricata

Genomic Location: sc0000852_pilon:5236...28072
NR annotation: XP_044176766.1, nucleotide-binding oligomerization domain-containing protein 1-like [Acropora millepora]
Species Acropora muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amur_s0852.g2.t2

atggagtgctcggcaatcattgaaaaaatcagtcgtgaaactttaaacaagttcacatttggagtggttgcactattgtggattgcattcggtggcacacttattggagcattctcagatatggaatacaatgaacccagacaagattttcgatgtgatgtgacgggggacaaagcaaatgccgatttcatccgagtaatgtgctatgatcaataccgggaacaaaatcacaaactcggcatcccccctctcctctttgtcctagtgaatatatccctggttccaattgtgaccgcgatctactctatctacgccaactcaatagttgagaggctcaaacgtagccatcaagacgcccaaggagagcccaccgatcgaggacgaaaccttttcttcgcatatctctttcaactcattattaacatcatttttgaggtaactttcatcatcttgctagaaacacaactattatatcccaggaactttccgtcacacttttcttgttcctcgtcagttaacggaacacaatctaccacttcattcaactgttccaatcatcgagcagcttctaaaagtatctggatcagagttgttacagcagcgaacggaatattcgcattgtttgctttcctggagatcatttggatcttatcgcgaggtagacatggaaaagaattcatggaaaattggcggttttatgcggatcatttaaaatcaaactcaaacgaacagcgccaaggacgaccagacggaattcctttaatggaatcacaagtccaaaatgatttccacagtgcaatagagaccctgaaaaagaattgcttgcaggacactgaaaagctaaatgatcttaaacagccttttggcagaccagatcccggtgaaggccacatacatgatctcacaatagacaagatctatgtccatgtaagcatagttgaaggcagagcttaccatgaatttacagaagacaggtgggaacaacttaaaaaatacccgccccgtgctgatgactgtctcttcaaaaaaccaggagatcttcttgaccgggatcacaagaatgttctcgttgtaggccgtcctgggataggaaagacgtcattcagcacaaagttgcttcgcctttgggcatctggtgaggcttttaatggagatgaacatttcaacgttgtcttcctcttgaaatttaggcgttttaataatgacaacgcaaacttgagccttcgtgatctgatcgctcactcagaaacagtccagagtttggatgatgctgtttgggattttataaaacaagaacctaccaaggttctgttaattttcgacggattagatgaatattcaagaaaagaggatatcaagacccaagatgacccaacttacaaaaactgtgtggaagaaaagatgcccgtttctgttttgtataacaaactgggagagggaaaacttcttcccggtgcaagcatactcacgacaacacgaccaactgctgtgaaatgtgttcgtcatctatcatttcaaagaacagtcgaaatccgcggattcacgtcggacgacgttaaggaatatgttgagaattttactcgaggtaaccccgaagcagggaagaaaatgtgggaacacatcaagtccaacattaacctgttttcattttgctacatcccaatgaactgttttctcatttgccactgcttgcttcaaatcatcctttctgagtcttcccaagcactgccaacaaagatgacggacatttataaaatgaccgtaaagatcttcttgttcaatcacaacaggcaaggtttctctccggaggaacttgcaacgctcaagtcaacctacatggatgagccttttgacaagttgcctgaagaacttcaaaacatcttcaacagtcttggagaaatcgcttttaacgcgattgaagaaggaagactcctctttgaatcaagcgaagtcagtgggttagaagattgcggactgcttcacaaattgccagaccaaaaacggagagcattggatgacccgtcaaagtcccaattctgttttactcacctgacagtgcaagaattctttgccgcaaagcatctggtggacagcaagacagatgagaaaattgaaaggtttgtttgcgagcatatctatggcggcacatggcaagtggtactgcagttcgcagccggactgctgaagagctcactaagtaccgacattttcatcaagctgttgccggagtcgactgagaagggaaaaaaccgtgagtctttagaaccaaaaacactgacctactggccagggacaagaggagaaaaacatctagttgtacaagtatgtaagtgtctgtacgagattaacgacgaaaagcagcagccagtattacaaaacaaaatagagaaaattaaattcaacgcggttgacttaagtgaatgttcactcgcaccgattgatgttgctgctgtcttacatttcttagaaaatgctgaagaagttttgtacattaatttacagtacaataagttgggagacttaggcgcaaacgaagtgaaaaaaattgctgttaacaaggaacgcaaactaaaatcgttaaacctcagtcataaccagttaaccgacaacgcagcgaaggatttcgctgcagcacttaaccacagtaattgtaaactagaatcgttagacctcgctgaaaagaagttcaccgacaacgcagcgaagaatttcgctgcagcacttaagcacagtaattgtaaactaaaatcgttaaacctcagtcataaccagttcaccgacaacgcagcgaaggatttcgctgcagcacttcagcacagtaattgtaaactagaatcgttagacctcatgaataacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttcagcacagtaattgtaaactaaaatcgttatccctcagACATAGAGACAGCAATTCTTTATTTGCAGAGGATGATGAAAGGGAAGAAGCTCTATTAAGTGGAGGACTTGATCTTATTGTAGTTCCAGGACTCGGCTTCACAAAGCATGGTCTTCGTCTCGGCCGAGGTAAGGGTTACTACGATAATTACATCAAAAAGTGCATCGACAATTGTGAAAGGAAACCGTACTTAGTGGGTTTGGCTTTCAGCACTCAAATTTGTGATGACCTTCCAGTTACAGAAAGAGACATGGTATTAGATCACGTGATATCATATGAACCCGATTAA

Transcript

amur_s0852.g2.t2

gtcgatcgtgttgattcagtcgccctcgccttcagaagcgacaagaatccgggcaaagcaaaagattggttgtgtatgaagcttatccaagaggtttaaagactggctggattcaaagtgtaatttgcatgaagttatagagGGTACTCTTTGGAATGATTATTTTGGATTGTTAGCAAGATAGTTACATGCATTTTCTGTCATGCCTTAGCTCTTTTAAAGACTGCTGCATTGTATAGAGATTGATCTCCTTGTAAGatcagagggaaagacgaacaatcagttgcaaaatggagtgctcggcaatcattgaaaaaatcagtcgtgaaactttaaacaagttcacatttggagtggttgcactattgtggattgcattcggtggcacacttattggagcattctcagatatggaatacaatgaacccagacaagattttcgatgtgatgtgacgggggacaaagcaaatgccgatttcatccgagtaatgtgctatgatcaataccgggaacaaaatcacaaactcggcatcccccctctcctctttgtcctagtgaatatatccctggttccaattgtgaccgcgatctactctatctacgccaactcaatagttgagaggctcaaacgtagccatcaagacgcccaaggagagcccaccgatcgaggacgaaaccttttcttcgcatatctctttcaactcattattaacatcatttttgaggtaactttcatcatcttgctagaaacacaactattatatcccaggaactttccgtcacacttttcttgttcctcgtcagttaacggaacacaatctaccacttcattcaactgttccaatcatcgagcagcttctaaaagtatctggatcagagttgttacagcagcgaacggaatattcgcattgtttgctttcctggagatcatttggatcttatcgcgaggtagacatggaaaagaattcatggaaaattggcggttttatgcggatcatttaaaatcaaactcaaacgaacagcgccaaggacgaccagacggaattcctttaatggaatcacaagtccaaaatgatttccacagtgcaatagagaccctgaaaaagaattgcttgcaggacactgaaaagctaaatgatcttaaacagccttttggcagaccagatcccggtgaaggccacatacatgatctcacaatagacaagatctatgtccatgtaagcatagttgaaggcagagcttaccatgaatttacagaagacaggtgggaacaacttaaaaaatacccgccccgtgctgatgactgtctcttcaaaaaaccaggagatcttcttgaccgggatcacaagaatgttctcgttgtaggccgtcctgggataggaaagacgtcattcagcacaaagttgcttcgcctttgggcatctggtgaggcttttaatggagatgaacatttcaacgttgtcttcctcttgaaatttaggcgttttaataatgacaacgcaaacttgagccttcgtgatctgatcgctcactcagaaacagtccagagtttggatgatgctgtttgggattttataaaacaagaacctaccaaggttctgttaattttcgacggattagatgaatattcaagaaaagaggatatcaagacccaagatgacccaacttacaaaaactgtgtggaagaaaagatgcccgtttctgttttgtataacaaactgggagagggaaaacttcttcccggtgcaagcatactcacgacaacacgaccaactgctgtgaaatgtgttcgtcatctatcatttcaaagaacagtcgaaatccgcggattcacgtcggacgacgttaaggaatatgttgagaattttactcgaggtaaccccgaagcagggaagaaaatgtgggaacacatcaagtccaacattaacctgttttcattttgctacatcccaatgaactgttttctcatttgccactgcttgcttcaaatcatcctttctgagtcttcccaagcactgccaacaaagatgacggacatttataaaatgaccgtaaagatcttcttgttcaatcacaacaggcaaggtttctctccggaggaacttgcaacgctcaagtcaacctacatggatgagccttttgacaagttgcctgaagaacttcaaaacatcttcaacagtcttggagaaatcgcttttaacgcgattgaagaaggaagactcctctttgaatcaagcgaagtcagtgggttagaagattgcggactgcttcacaaattgccagaccaaaaacggagagcattggatgacccgtcaaagtcccaattctgttttactcacctgacagtgcaagaattctttgccgcaaagcatctggtggacagcaagacagatgagaaaattgaaaggtttgtttgcgagcatatctatggcggcacatggcaagtggtactgcagttcgcagccggactgctgaagagctcactaagtaccgacattttcatcaagctgttgccggagtcgactgagaagggaaaaaaccgtgagtctttagaaccaaaaacactgacctactggccagggacaagaggagaaaaacatctagttgtacaagtatgtaagtgtctgtacgagattaacgacgaaaagcagcagccagtattacaaaacaaaatagagaaaattaaattcaacgcggttgacttaagtgaatgttcactcgcaccgattgatgttgctgctgtcttacatttcttagaaaatgctgaagaagttttgtacattaatttacagtacaataagttgggagacttaggcgcaaacgaagtgaaaaaaattgctgttaacaaggaacgcaaactaaaatcgttaaacctcagtcataaccagttaaccgacaacgcagcgaaggatttcgctgcagcacttaaccacagtaattgtaaactagaatcgttagacctcgctgaaaagaagttcaccgacaacgcagcgaagaatttcgctgcagcacttaagcacagtaattgtaaactaaaatcgttaaacctcagtcataaccagttcaccgacaacgcagcgaaggatttcgctgcagcacttcagcacagtaattgtaaactagaatcgttagacctcatgaataacaacttcaccgacaacgcagcgaaggatttcgctgcagcacttcagcacagtaattgtaaactaaaatcgttatccctcagACATAGAGACAGCAATTCTTTATTTGCAGAGGATGATGAAAGGGAAGAAGCTCTATTAAGTGGAGGACTTGATCTTATTGTAGTTCCAGGACTCGGCTTCACAAAGCATGGTCTTCGTCTCGGCCGAGGTAAGGGTTACTACGATAATTACATCAAAAAGTGCATCGACAATTGTGAAAGGAAACCGTACTTAGTGGGTTTGGCTTTCAGCACTCAAATTTGTGATGACCTTCCAGTTACAGAAAGAGACATGGTATTAGATCACGTGATATCATATGAACCCGATTAATCGATTGAATAGCGCCAATAATAGAGGCTGGAATGCACAGTCTTGCGCGCTATTTTTTCTTCTCGCAAGTCTGGGCATCGCGTTGTTCTCCCTTCAGAGACCAAAGGCGAGAAGTTGCGAACATGTGTGGTGTTAGCGTGTTAGAGATATTCCATCCTTATTCTGCGGAAAATCTGCGTGATAATATCAATCTCTGGCTTCAAGATAAGTCTCACCTATTAGATTTGAAAAtgaggaaattatatatgaaatgaactttatattgaactgcggatatgaagtcgagtaagctatgatccccgttgaagtcctgactttttcaggcttctctacgcgtttgcacaaattgcgtccttaactgcgaggatcatagcttacaagattCGTAAAGCTAGCTTCTTCGCGACCCGAAATAATTTTGGAGACCTCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K3Z0	Nucleotide-binding oligomerization domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nod2 PE=1 SV=1
P49914	5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens OX=9606 GN=MTHFS PE=1 SV=2
Q9D110	5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus OX=10090 GN=Mthfs PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000076 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF01812 all species →	5-FTHF_cyc-lig	5-formyltetrahydrofolate cyclo-ligase family	Family	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR002698 all species →	Family	5-formyltetrahydrofolate cyclo-ligase	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024185 all species →	Homologous_superfamily	5-formyltetrahydrofolate cyclo-ligase-like domain superfamily	Interproscan
IPR051261 all species →	Family	NOD-like receptor (NLR)	Interproscan
IPR038359 all species →	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24106 all species →	NACHT, LRR AND CARD DOMAINS-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amur_s0852.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.