Gene detail

Detailed information of amur_s1250.g1.t1 in Acropora muricata

Genomic Location: sc0001250_pilon:706...29448
NR annotation: XP_044168481.1, uncharacterized protein LOC122952682 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amur_s1250.g1.t1

ATGGCGGACCGCAAGGCTAGAAGCATCACATTTAAAGTTCCAGCAGGAACAAATCTAGGAGACATAAAGACGGCTATCgaaacggaaaatacgaaaaatgtaatcaccgtctttcaggagataggagcaaatgagtaccttgttgaattaaccgaagcaacccatgtgcaagaactaattgagaacaggtttgatgctggctctattcacatcagatgccacccgcctcacggctattacttgaatgtaagtatcattggcttgaaagcctatatctctgatgacgaagtccaagaaaaactggccaaatacggcgagatcaagggtgcaattattcgcctcaaatataaatccacacatgagctggctggtcttgaaaacggtaactgcttagtacgtatggcactgacatccccctcgattccttactccttgaacatcggcggcgaatggtgcagggcgattcataatcatcaacaacttatctgcagccattgtaacgaagCTGGACATTCACGCAAGAATTGCCCACAAATTCAATGCCGTAACTGCCATCAACTAGGGCATATATCCTATCACTGTCCGCTTCGAGTGACACATCACACGGAAACAGCCTCCGAAGAAAATACCATAAGCAAAAATAACACAACTGAACAAAATGTAACTGACAACGATGACTCAAATATGACAACGGAAGAATCTACTGAACCTATCGTACCGCAAGAATCACCGGATGACGAGCAAGCCAATACTTCAACAAATGAAAAAATTATAAAAACACAAAATAATGAACAAACAAAGGACAACTCTACAGGAGAAACTTTGGATCATTGCGATGTACCAGCATATAACAAGGAAAAAGACACTCCATCAGATACCCTCCCACCTAATGACAACGAGGAAAATAATATGGATTTTTCGATTAACACTAAACGTCCACATCAGACTGACTCTGATTCAGACCTGGGCCCGTTGCCACGTCGCCAAAGAATCAAGCCTACACCGAACACCAACGCTACAAGGAATTCTCACAATaagaagcaaaaagacaaaaacaagaagcacttccttcgatggatagaaattctttacacggaaacaatgagttctgtcaaaattaatggttggatgacagctgttataccgatccaatgcggattgagacaaggctgtccgctctcaatgcccttctacgtactcactgcagagctattagctactcacatcacaactcaccaaggagttaaggcattccaacacccacaagcaacaccaaagatatcgcagtatgccgacgatattactctactactagcagacgataattccattacgaatgcttttcaaatatttcaagcctatgaggcagcttccggagctcgcattaacttacagaaatgcgaaggattatggtctggctgttaccgagccagaagcgactccccaacgccctttgaatggtctaataccagtctaccagacaaattactcggcctctatgtggagaatattgattgtactaatcaaaacttggaatccaaaatacacaaactccgtaacatcacagccgcttggcgacaccgcgatctcagcctgaaaggcagagccttagtcattaatggccttttgacctcaacactctggtaCCTTGCCACTAACATCCATTTCCCAGCATGGGCTGTTCAAGAAATTGAAGACATCGTTTACTCCTTCTTATGGGACCACAAGCGCCCATTACTAAACCGTGACGTTCTATCCTTACCAATCGCGGAGGGCGGCCTTAATCTTCCCTGTATAACAGATAAAATTCACGCACTCCGACTCAACACACTTAAACGGCTTCTCACCCCCGACAAAGCATTCTGGAAAATTTTCACCAGCCACTTCCTTCGACTCACACATATGCCACTTGGCAAATACACATTAGCCCTCAACTACACCTTGCATCACATCGATCGCCACATACCACCTTTTCACAGAGACCTACTCACAGCCTGGCACACTCACGCCGATTACCGTCAACGCATCCATCCACCGATATCCTGA

Transcript

amur_s1250.g1.t1

TTGATATATGAACGCATGTTAGACTTAAATTCCGAGAAATGATGCTTTTACTTTCAAACAAAATATCTACATCGAACGTGTAATAACACCTTTTGACCGCAAATTTAATTAACCGAAACGAAACGAAATTTGCATAAAAAATCGTATTTTAAACACAAGCCAAACCTTGTAAATTCGACTTGAACATATTCTGTTTATGACTACTACTTTATTAGCTCTACTGAGCAAACGACTGAGCGATTACTGCCTAAAAATCTATGCAAAAATTTTTGATAGCAAACTAATTGTTTTCGAAGAAAATTTGCATAATAAAGTTATATCGAGCACTCGGTCACGCCATAATGGCGGACCGCAAGGCTAGAAGCATCACATTTAAAGTTCCAGCAGGAACAAATCTAGGAGACATAAAGACGGCTATCgaaacggaaaatacgaaaaatgtaatcaccgtctttcaggagataggagcaaatgagtaccttgttgaattaaccgaagcaacccatgtgcaagaactaattgagaacaggtttgatgctggctctattcacatcagatgccacccgcctcacggctattacttgaatgtaagtatcattggcttgaaagcctatatctctgatgacgaagtccaagaaaaactggccaaatacggcgagatcaagggtgcaattattcgcctcaaatataaatccacacatgagctggctggtcttgaaaacggtaactgcttagtacgtatggcactgacatccccctcgattccttactccttgaacatcggcggcgaatggtgcagggcgattcataatcatcaacaacttatctgcagccattgtaacgaagCTGGACATTCACGCAAGAATTGCCCACAAATTCAATGCCGTAACTGCCATCAACTAGGGCATATATCCTATCACTGTCCGCTTCGAGTGACACATCACACGGAAACAGCCTCCGAAGAAAATACCATAAGCAAAAATAACACAACTGAACAAAATGTAACTGACAACGATGACTCAAATATGACAACGGAAGAATCTACTGAACCTATCGTACCGCAAGAATCACCGGATGACGAGCAAGCCAATACTTCAACAAATGAAAAAATTATAAAAACACAAAATAATGAACAAACAAAGGACAACTCTACAGGAGAAACTTTGGATCATTGCGATGTACCAGCATATAACAAGGAAAAAGACACTCCATCAGATACCCTCCCACCTAATGACAACGAGGAAAATAATATGGATTTTTCGATTAACACTAAACGTCCACATCAGACTGACTCTGATTCAGACCTGGGCCCGTTGCCACGTCGCCAAAGAATCAAGCCTACACCGAACACCAACGCTACAAGGAATTCTCACAATaagaagcaaaaagacaaaaacaagaagcacttccttcgatggatagaaattctttacacggaaacaatgagttctgtcaaaattaatggttggatgacagctgttataccgatccaatgcggattgagacaaggctgtccgctctcaatgcccttctacgtactcactgcagagctattagctactcacatcacaactcaccaaggagttaaggcattccaacacccacaagcaacaccaaagatatcgcagtatgccgacgatattactctactactagcagacgataattccattacgaatgcttttcaaatatttcaagcctatgaggcagcttccggagctcgcattaacttacagaaatgcgaaggattatggtctggctgttaccgagccagaagcgactccccaacgccctttgaatggtctaataccagtctaccagacaaattactcggcctctatgtggagaatattgattgtactaatcaaaacttggaatccaaaatacacaaactccgtaacatcacagccgcttggcgacaccgcgatctcagcctgaaaggcagagccttagtcattaatggccttttgacctcaacactctggtaCCTTGCCACTAACATCCATTTCCCAGCATGGGCTGTTCAAGAAATTGAAGACATCGTTTACTCCTTCTTATGGGACCACAAGCGCCCATTACTAAACCGTGACGTTCTATCCTTACCAATCGCGGAGGGCGGCCTTAATCTTCCCTGTATAACAGATAAAATTCACGCACTCCGACTCAACACACTTAAACGGCTTCTCACCCCCGACAAAGCATTCTGGAAAATTTTCACCAGCCACTTCCTTCGACTCACACATATGCCACTTGGCAAATACACATTAGCCCTCAACTACACCTTGCATCACATCGATCGCCACATACCACCTTTTCACAGAGACCTACTCACAGCCTGGCACACTCACGCCGATTACCGTCAACGCATCCATCCACCGATATCCTGAAAGAACCACTCATCCACAATCCACTCATATCTGCCAACAATGCTCCCTTACTCCACTCCGACTGGATTAAAGCTGGCGTCCTATC

Protein

Uniprot

Uniprot term	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan