Gene detail

Detailed information of amur_s1289.g1.t1 in Acropora muricata

Genomic Location: sc0001289_pilon:4666...25043
NR annotation: XP_044181349.1, stimulated by retinoic acid gene 6 protein-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amur_s1289.g1.t1

CTTTTTTTTTTATCGAAACTGAAGATTTACTTCTTTTGCTGTTCCTAAAAGATAAGAAAAAGCCCTCAAATGACTTACCGGAAGGAAGGTTATGATACTGGAAGTGCTGCGTGACTGGTTTGTACATTACATGGCGTGACCTTTGTATCGTGTGTGCGTGTTGTCTGGTTCCAACTTTTGCGCGACTACAATTCCACGAAAACAAGCAAGCCAGCTTGTACGATTTCTCGCTAAGACTTTTGACATGGCGAGTAATTCAGCGAATGCCTCGCAAAACCTTAACGCCACTTGCATAGGTGTTAAGCGCGGCCTCTTTGAGCTTGGTTGCCTCGGCCCTTCCCTTGCCATCATTTTGATATTGACATTTCTCAAGCGCAGAGAGAGTTACAAACTTGGTTCCTGTAATGGCCACCCGGGTCTGGTGATCCCAATCAACTTTCTCCGAAGTTCTAAGTCGAACAGATTTGCAATTGCTGCTACTTTCGGTGCTACAGCAAGTACTTGTCTTGTTCTTTTTGTGGATCCGAACCTCTTCACGTTCTTTCCAGAAGACAGCCATCCTTGGGTAAAAGTTATTCAGGGGCTTGTATCTGTGCTCGTGTATGGAATCGTGTTTTATCCCTTGTTTGCCTGCTTAACAACCAAATACAAGCTGATTGGGTCCTTAATGGGATTTGTGTATGCCGCAATCAGGTTTCCCTTCGAACTTGTGTTTATTTTTCAGTGTGGAAGCTATTATGATGAGAACACAAGAAAAGTAAAGTATCTTCAGGTCCTAATCTTACTTCCTATGCTGTGTTGCTTGTTGTTTATTTTGTTTCGCTTTGGTGTCCTTCTCGGCATCCAAGTCCGAAAGCAGTGGTTTTCCGATTCCAGTTATGGCACTTGGCTGCAGAGAGTGACAGTTTCTGAAACTGATGCAGACTTTCTTCTAAATGGAAATACAGAGATGAAGCACGTGAGCAGACTGCTTAATTTGGAGCGGAACAAGACTGCTTCAGATATGAAAGGGTTCAGGAAACATTTGTATTGCATGTACCAGCCAAGACCAGATTTCAAATTCTCTACTCAATTCGTCTCAACTTTAATTGTTGCCGGAATTATATTATTTCAGATTGCAGTTGCATATTTTATTATTTCTGACCAGCTCAAGAAACTCTTTCCTTCATTGTGTGATAGTTATCCAGATCCAAAGAGTTGTGAGAATTCGTGGAATACTGTATACGGATTCGTGGATGGAGCATGGGTTTTGTGTTTACTCATTTCCATAATATTACTTCTGCATTTCATGAAGTGTCATCGAGATCATGTCTTCCAGCTGTATCGAGGGGAAAGAAAATTTTGCCGAGATGTCTTTGTTTCTCCCAGAATGCTAGTTGGTAAAAGCCTTCGCTTCTCGGGATATCAGATTGCCCATACGATAATTGGCTTTTACTGCTTGCTTTTACCCATGGTCATTATCAGCTGCATCGCTGGATTCGCTGTCGTTTACTCACACAATCCTCTTGTCCAGATTATGTTCAAGAACTTGAGAAAATTTGCGTATGGAATTTTGCCCACAGTGGTTTTGGCTGCCGCCATTTGGCTGTTCCAGCTATTCCTGTCATTTTTTGTCTTTTCTGACAGAGGTTTTTCCAACACCACCATAACTGTAGACAACAGGCAGCTTTTTTCCATTGCTTCCTATTTCTTTTTCTTCTACAATATCATTCTTGGATTTTTTGTGGCGCTTATCCGCATTCTGAAAGGTTTGCTGTTGGGAATTATTTTCATGGGACGGATTGATCGAACGTATTTAATGCAGGGATATGAAACCTGGGACAAAGCCTTTGTAGCGTACCTGGGATTTCTCAATGTCCTCGTTGCCCACAGCCATCCTGTCATGCTTGTGTTTTGCCATCTGCTGATGAACAGAGACAGTGGCCTCTGCCTGGAAGAGTCCTTCCCACGTACGGAGTCTTCAGTAACCTTGCAGGAAGAGAGATATGGTCAAGGACTCGTTCGTCGGCGCCGTCTAGCTCGCTTTTCCCGGAAAGCGGCAAATCGCTGGCTGTTGGCGGTCTTGCTGCTTCGTAACCCTTCTCTCTTGAGGTATCGCCGGCAGGGTGGTGGAGTGACACGCTTTGTTGATAGGAGTGGAAGTATCAACTCCGCTGAGGGAGTTCGCATTTAGTTCAGCTCTCTTGAACACTAAAACGTCCAATACACTCGTTTGATACTG

Protein

Uniprot

Uniprot term	Description
Q9DBN1	Stimulated by retinoic acid gene 6 protein-like OS=Mus musculus OX=10090 GN=Stra6l PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14752	RBP_receptor	Retinol binding protein receptor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026612	Family	Receptor for retinol uptake STRA6-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21444	COILED-COIL DOMAIN-CONTAINING PROTEIN 180	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0071939	Biological Process	vitamin A import into cell	Interproscan
GO:0034632	Molecular Function	retinol transmembrane transporter activity	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23088	STRA6; vitamin A receptor/transporter (stra6) family protein	-	Transporters	ko02000	deepkoala